Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001602 [exp] 63 / 6e-12 ND / Lus10010609 [exp] 61 / 8e-11 ND / Lus10009735 [exp] 57 / 2e-10 ND / Lus10017785 [exp] 60 / 3e-10 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10030335 [exp] 52 / 8e-08 ND / Lus10001188 [exp] 41 / 8e-05 ND / Lus10012495 [exp] 40 / 0.0001 ND / Lus10042790 [exp] 41 / 0.0002 ND / Lus10023682 [exp] 39 / 0.0004 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003489 pacid=23175102 polypeptide=Lus10003489 locus=Lus10003489.g ID=Lus10003489.BGIv1.0 annot-version=v1.0 ATGAAGGGGGCCGGTGACATCGGTGGTTGGACCGTGCTGCTTACTGCTTTGGCACTGGAGAGGTCCCCGACCATAGCACGACGAGTGCATGAGGACAGGT TTAGAGGTCAGATGCGTAGGAACTTATTGGCAACACCCGCCTATATCGATGGAAGAACTGGATGCATGACAGGAGTTGGAACCTTTTCTCCTGGAGTTGC GGTCTTAGCGACCAGTTCTAGGACCAGAACCAAGTCATGGCTAAACCAAATCTTGGAGTGCTGGAAGATGCCACAAGAACATGAATCAGTTATAGGCAAC GACGACGAATTCACTTTCGTTCTCTGCTTCTTTCCTCACAGCGACCGTGACGAGACGCCGCTGCTTCCCTCATCGGCGACGAAGAAGAGGAAAAGATTCG GGTTTGCATGTTGTCGGAGGATGCGTTTGTCGAGTACTCCGACAACATGCAAGCCCCGATCTAGATCTAGGACGGAAGGAGATGGTGACCTCGCCGCCGA CGACACCGCCGGTGGCAGCGGCGAAAAGATGGACAGAGAGAAGGGAAGTCAAGTAAAAAAAACTTTACGAAAAAAAGAAAAAAGGAAGAAGAGAAAACAC AGCCTCAAGAAGTGGGATTGGGGTGTAATAAATTTGGACTGTAGTGAGATTGCTTGTGGTGAGATTACGGGGATGTTGGTGTTTTGCTACTTTTAG
AA sequence Show only first row Show all	>Lus10003489 pacid=23175102 polypeptide=Lus10003489 locus=Lus10003489.g ID=Lus10003489.BGIv1.0 annot-version=v1.0 MKGAGDIGGWTVLLTALALERSPTIARRVHEDRFRGQMRRNLLATPAYIDGRTGCMTGVGTFSPGVAVLATSSRTRTKSWLNQILECWKMPQEHESVIGN DDEFTFVLCFFPHSDRDETPLLPSSATKKRKRFGFACCRRMRLSSTPTTCKPRSRSRTEGDGDLAADDTAGGSGEKMDREKGSQVKKTLRKKEKRKKRKH SLKKWDWGVINLDCSEIACGEITGMLVFCYF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003489 [exp]	0	1
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10010818 [exp]	7.2	0.6814
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026073 [exp]	13.9	0.6510
AT4G15040			Subtilisin-like serine endopep...		Lus10028843 [exp]	28.0	0.6163
AT3G18150			RNI-like superfamily protein (...		Lus10029433 [exp]	62.7	0.6450
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10035076 [exp]	94.2	0.5782
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	103.7	0.6157
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	131.9	0.5838
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	205.5	0.5727
AT1G13570			F-box/RNI-like superfamily pro...		Lus10006346 [exp]	225.0	0.5782

Compare expression of checked genes

Lus10003489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.