Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65470 514 / 1e-167 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024521 [exp] 1199 / 0 AT1G65470 647 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10004453 [exp] 1127 / 0 AT1G65470 632 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10008729 [exp] 907 / 0 AT1G65470 616 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10032711 [exp] 64 / 5e-11 ND / Lus10010599 [exp] 54 / 1e-07 ND / Lus10015475 [exp] 55 / 5e-07 AT1G71220 2136 / 0.0 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2) Lus10019946 [exp] 54 / 1e-06 AT1G71220 1474 / 0.0 PRIORITY IN SWEET LIFE 2, EMS-mutagenized bri1 suppressor 1, UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups (.1.2) Lus10033036 [exp] 45 / 5e-05 ND / Lus10013068 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G077800 [exp] 668 / 0 AT1G65470 346 / 2e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Potri.002G209795 [exp] 555 / 0 AT1G65470 326 / 2e-100 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12253 [flax] [poplar] CAF1A Chromatin assembly factor 1 subunit A
Representative CDS sequence Show only first row Show all	>Lus10003491 pacid=23156265 polypeptide=Lus10003491 locus=Lus10003491.g ID=Lus10003491.BGIv1.0 annot-version=v1.0 ATGGTGATCCTGTCATGGAATTTTCGGGGCTTGGGAACAACCATGAACCAGAGCGCAAGGATGCCGAAGGCAGAGAGGAAGGAGCGTATGGAGTTGTCCA TATTGCAGGGAACGCCGAGATCGGAGAAGAAGACGGAGCTGACACTGACGACAACGACCCGCATCACCACTGCTGCTCCAGCGAAACCGTCAAGATTTGA AGTACATGTGAGTCAGCTCGAGGTGGCTCTCCCAGCCGGCGGCCAGGTCCGAATAAACCCGCACGTGGCGGGGATTAGTGTTTCTCCATCTCGCTGTAAA ACAATGGCGGAACTACCTAACGTTCCGATTGACCTTCTCGGTCCTCCAAAACCTAGCTGTCAGAGTCGCCCTGCAAAATCCCTCAAACGGAAACGACAGT CGCCGTCCCCTTCCCTGCTCAACTTGACACCTGACCAGAAAGACTCTCAGGCTCAGCTGCTGCGCGCGGAGTTGAGCTCTCTCATTAGCTATTTCCACGA AATCGTGAGTAACAAGGTCGGATTTGGTTTTGGCCTTGATTTGGCCGGAATGGAGTGCAAGACGGTAAACGGAATGGTGGCTCTGTTGATTGAGGAGAGT CAACTCCCGTTAGGTAAGCTTATTGAGCAGCTAAAGAGCAAATTGGAGGTAGCTCAGTTCATGAATGAAACCACGTCTACTGCAGCAGGGGTGATGAGCA CAGTGCTGTTCGTTGGCCAGAGAATTGCGTATGGGGTGACCAATTTAGATGTTGATGTGCTGGAAGACGAGACCCAATCTTGTCTGTGGTGCTGGGAGAC AAGGGACCTGAAGTTGATACCAAAGTCTTTGCGCAATGCTCTTAACGTTAGACGTCAATGTCGGAGGAGGATCCATGAGAGAATTACTGCCGTTTCTGCC ATGATTACTGTACTTCAAAAGATGGAGGTAGGTGAAGATTACAAAAGTGATTTGACAAAGGCAGCTGAGAAGCTTGGTAAAGCATTAGGTGAAAGTGATA TTCGGTCATACATGGATGGGATGTTGCTGAAGAATAGTGCAGAGATGGATGATAAAGAAGTGAAGCGAGAAGAAAAGTTACTTGTCAGAGAACTTGAGAA AAATAAGCGAGCATCCGACAAAGAGAAAAGAAGAATGGATCTTGAAGTTCAAAAAGAAAAGCAACGAATAGAAAGGGAGCAAAGAAAATTACAAGAGGAA GCTGAAAAAGTTGAAAAGCGCCGTGAGAAAGAAGAGTCTGAATTGCAGAAGCAGTCAAGAAAACAGCAAGATGAAGCAGAAAGGGAGAAAAGGCGCCGTC AGAAGGAAGAAACTCAGCTGAAAAAGCAGATTGCTTTGCAGAAGCAAGCTTCAATAATGAAGCAGTTTCTAAAACGAAATAAAACAGATTCCGAACGCCA AAATGACCCGTCTTCTGCTTTTGTTAGTTCCTTCACATTGCCGGCAAAAGATCATGATAGGATACCTATGGTAGTTACGCAACAGATGGACACTACTCTT TCGTCAAATGATTGTACTGGAATTGATGAAATTCGCAAGTCACATATGTCTTCCTGGTGTCACCAGGATCAATCTCTTCATTCAAGCAGAAAACGACATT GGAGTATACGGCAGCAACCAAAGAGTAACTTAATTAAGGAGCACAAGCTAGTTTCTAGGAGGGATCTAGAAAATGACGACGAGTTAAGTATAGAGGAACT TGTAAGTCCATGTGCAGAGCATGCCTATGATGATGGGTCGTGCTTTGCCCTTCCTAGCAAGTCTGTGACTGATGTTAAAAGGTGCCATCGGAAGAAACAA TTACTGCAGTTTGACAAGTGCCATCGACCAGCATTTTATGGCATTTGGCCTAAGAGAAGTACTGTTGTTGGACCACGCCAACCTCTGAAAATGGATCCTG AATTAGATTATGAAATGGAAAGTGATGAAGAATGGGAAGAGGAGGATCCTGGAGAAAACCTCTCGGATTGTGGTAAGGATGATGAAGAGGAACCTCTAGA AGAGGGAACTGCAAGAGCTGATGATGAAGAGGATAGTGAAGATGGCTTTTTCGTACCTGATGGTTATTTCTCAGAAAATGAGGGGGTTCAAATTGACAGA ATGGACATTGATGTGTCAGTTGAGGAAGCAAACAGTAGCTGTAACCAAGACTCTGAGAGTGGGGTGTTCTATGCTTTGATTCAACAGCAGAGGCATCTAA ACAATTTAACTGAAAGTGCACTCAAGAAAAACCAGCCTTATTTTATATCGAATCTATTTCATGAGAAGGTTATATTAGTACGGTGTGCAGATCATAGTGG GATATCGAAGGCGGAAAAGATGTGCTTACAGGGTCTTTGTCTACTTGCATTCCCTGGTGGACAAGCAATTGATATATCAATTGACGATGTACAAATGGAG GATCAAGATGATTTGATATCGAGTGCCAAGACTGTTTTGAAGGCCACGACTCCCCCACTGCAAGACTCAGATATGCCTGCCATTATATCTGCTGTCCAGT CGTGCTCTCAAAGTATTGGGAAAGTCGTTGAAACTTTGCAACAGAAGTTCCCTACAGTGTCCAAGTCGCATCTGAAAAGCAAAGTCCGTGAGATATCTGA TTTTGTGGACAACAGATGGCAGCTGGTGAAGCTCCCCTCTGGTTCAACGAGTGGCAACTCAGAAGCGATTCACTTGTGGATAGAGTTTGGTTTAGCTGTT CCGAATCGTTTTCCACTCCAACGATCGCAACCAGTTCAGGAAACTTCCTATCTAACCCATGTTGCAGTTCTTGTTGACGTTTCTGATACACCCATCGGTC ATGACACCGACTCAAAGGAAGGTTCGAGCTCCACCAAGGCTCCCTGTTGGTTGCTGTGTACAAGTTCTCTCTTCATTGATGATTATGGAATAGTGATTGG TGTATGGGGTAGGGGAGTGAAGAAATGGAACATCTGCCTTCAGCTTGGTCCGGGCAGAAGTTTTGAGCTTTATGCTCTAAATGAAAATGGGAATGAGTAC AAGCATTTGTCAAAGCGCATCAACACATGTGATTTTAGAGTAGTTGGTACAATTTGGGAATTGATTTCAGCATCACCTTCTGCAGATTTTGGACTAGTGA TTGTGGTATGGGGTCGGGGAATGAAGAAATGGAATACTAGTGTCGTCTATGGGTTCAAAGGTAATAGGCATTTACTACTTGATCCGAGCTACCCTTGGCT GGGTGATGAAAGGATTTGCAATGAAGAAAAGCTGCAATTGAGTCACAATGACTATCACTATCCCAAACCCATGGTCAAGCCTGATCTTGTGAGGAAGAGA ATAGGTAGCCAATAG
AA sequence Show only first row Show all	>Lus10003491 pacid=23156265 polypeptide=Lus10003491 locus=Lus10003491.g ID=Lus10003491.BGIv1.0 annot-version=v1.0 MVILSWNFRGLGTTMNQSARMPKAERKERMELSILQGTPRSEKKTELTLTTTTRITTAAPAKPSRFEVHVSQLEVALPAGGQVRINPHVAGISVSPSRCK TMAELPNVPIDLLGPPKPSCQSRPAKSLKRKRQSPSPSLLNLTPDQKDSQAQLLRAELSSLISYFHEIVSNKVGFGFGLDLAGMECKTVNGMVALLIEES QLPLGKLIEQLKSKLEVAQFMNETTSTAAGVMSTVLFVGQRIAYGVTNLDVDVLEDETQSCLWCWETRDLKLIPKSLRNALNVRRQCRRRIHERITAVSA MITVLQKMEVGEDYKSDLTKAAEKLGKALGESDIRSYMDGMLLKNSAEMDDKEVKREEKLLVRELEKNKRASDKEKRRMDLEVQKEKQRIEREQRKLQEE AEKVEKRREKEESELQKQSRKQQDEAEREKRRRQKEETQLKKQIALQKQASIMKQFLKRNKTDSERQNDPSSAFVSSFTLPAKDHDRIPMVVTQQMDTTL SSNDCTGIDEIRKSHMSSWCHQDQSLHSSRKRHWSIRQQPKSNLIKEHKLVSRRDLENDDELSIEELVSPCAEHAYDDGSCFALPSKSVTDVKRCHRKKQ LLQFDKCHRPAFYGIWPKRSTVVGPRQPLKMDPELDYEMESDEEWEEEDPGENLSDCGKDDEEEPLEEGTARADDEEDSEDGFFVPDGYFSENEGVQIDR MDIDVSVEEANSSCNQDSESGVFYALIQQQRHLNNLTESALKKNQPYFISNLFHEKVILVRCADHSGISKAEKMCLQGLCLLAFPGGQAIDISIDDVQME DQDDLISSAKTVLKATTPPLQDSDMPAIISAVQSCSQSIGKVVETLQQKFPTVSKSHLKSKVREISDFVDNRWQLVKLPSGSTSGNSEAIHLWIEFGLAV PNRFPLQRSQPVQETSYLTHVAVLVDVSDTPIGHDTDSKEGSSSTKAPCWLLCTSSLFIDDYGIVIGVWGRGVKKWNICLQLGPGRSFELYALNENGNEY KHLSKRINTCDFRVVGTIWELISASPSADFGLVIVVWGRGMKKWNTSVVYGFKGNRHLLLDPSYPWLGDERICNEEKLQLSHNDYHYPKPMVKPDLVRKR IGSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	0	1
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	2.0	0.8992
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	2.6	0.9113
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	3.7	0.9024
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	3.9	0.9010
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	3.9	0.8983
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	4.9	0.8838
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	6.5	0.8543
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	7.3	0.8892
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	8.5	0.8812
AT5G51340			Tetratricopeptide repeat (TPR)...		Lus10019124 [exp]	8.7	0.8642

Compare expression of checked genes

Lus10003491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.