Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53980 105 / 1e-28 HD ATHB52 homeobox protein 52 (.1) AT4G36740 84 / 1e-19 HD HB-5, ATHB40 homeobox protein 40 (.1) AT5G15150 84 / 3e-19 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT1G69780 83 / 6e-19 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT3G01220 82 / 1e-18 HD ATHB20 homeobox protein 20 (.1) AT3G61890 81 / 2e-18 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT3G01470 81 / 3e-18 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT2G18550 79 / 5e-18 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT4G40060 81 / 6e-18 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 79 / 2e-17 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013103 [exp] 307 / 1e-106 AT5G53980 107 / 3e-29 homeobox protein 52 (.1) Lus10012845 [exp] 83 / 6e-19 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 83 / 6e-19 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10041719 [exp] 82 / 6e-19 AT4G36740 192 / 9e-62 homeobox protein 40 (.1) Lus10008795 [exp] 83 / 7e-19 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 82 / 2e-18 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 82 / 2e-18 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10024031 [exp] 80 / 3e-18 AT4G36740 189 / 2e-60 homeobox protein 40 (.1) Lus10037200 [exp] 81 / 4e-18 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114500 [exp] 132 / 9e-39 AT5G53980 113 / 2e-32 homeobox protein 52 (.1) Potri.001G395100 [exp] 124 / 1e-35 AT5G53980 114 / 6e-33 homeobox protein 52 (.1) Potri.017G016900 [exp] 96 / 1e-24 AT5G53980 80 / 3e-19 homeobox protein 52 (.1) Potri.007G135100 [exp] 89 / 6e-22 AT5G53980 85 / 3e-21 homeobox protein 52 (.1) Potri.008G148200 [exp] 86 / 7e-20 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.007G029500 [exp] 82 / 2e-19 AT4G36740 208 / 2e-68 homeobox protein 40 (.1) Potri.012G070900 [exp] 84 / 4e-19 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.015G065400 [exp] 83 / 7e-19 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.017G081700 [exp] 81 / 4e-18 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.010G093400 [exp] 79 / 2e-17 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10003492 pacid=23156266 polypeptide=Lus10003492 locus=Lus10003492.g ID=Lus10003492.BGIv1.0 annot-version=v1.0 ATGGATTTCCACTCTCATGAAACCCAACAACAACAGCAGCAGATGATGAAGCGGCCACAAAAGAAGAGGCTGACGCAAGAGCAAGTGAGGGTGTTGGAGA GAAGTTTCAGCTTCAACAAGAAGCTGCTCCCGGAGCTCAAATCAGAGCTGGCGAGCCAGCTAGGCGTGCCGCCAAGACAGGTGGCAATATGGTATCAGAA CAAGCGAGCTAGGTGGAAGACCCAGACTCTGGAGCTAGACCACAACACCTTGGAACTCAAGCTTCAGAATGCGGCGGCCCACAAACGGCGGCTCGAAAGG GAGGTGGCTCGGCTCAATCACGAGCTCAGCAAGGCTCAGGATACGGTCGTTGCTTTCATGAACCATTGCCGCCATGGGGGGTGTACTACTTCTAGTACAA TAAATCCTAATTTATTGGATCATCATCATCATCTTCCTCCTGCTCCTATAACTATTCCTCCTCCTTCTGATGTTGAACACTATGATGATGAATGTCCTCC AATGAAAATGAATCCTTGCGGCTCTTCCTCTGACATCAACTTTAACAATCATGGACGTGGTGAGGAGGTTAATTTGCAGCTTGAGGATGAGCTTTATGCT TCTTTCGTCATGGGAGGTAATAGCGGGAGTAGTGGATCCACCTGCAGCTGGGATTAG
AA sequence Show only first row Show all	>Lus10003492 pacid=23156266 polypeptide=Lus10003492 locus=Lus10003492.g ID=Lus10003492.BGIv1.0 annot-version=v1.0 MDFHSHETQQQQQQMMKRPQKKRLTQEQVRVLERSFSFNKKLLPELKSELASQLGVPPRQVAIWYQNKRARWKTQTLELDHNTLELKLQNAAAHKRRLER EVARLNHELSKAQDTVVAFMNHCRHGGCTTSSTINPNLLDHHHHLPPAPITIPPPSDVEHYDDECPPMKMNPCGSSSDINFNNHGRGEEVNLQLEDELYA SFVMGGNSGSSGSTCSWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	0	1
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	1.7	0.9185
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	4.7	0.9176
AT2G42760			unknown protein		Lus10005429 [exp]	4.9	0.9146
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	6.0	0.9095
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	7.7	0.9018
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	7.7	0.8964
AT2G39530			Uncharacterised protein family...		Lus10031875 [exp]	9.2	0.7955
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	9.2	0.8847
					Lus10030905 [exp]	9.5	0.8945
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	11.0	0.8862

Compare expression of checked genes

Lus10003492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.