Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15090 503 / 8e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 104 / 5e-25 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G21580 82 / 2e-17 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT4G13010 65 / 2e-11 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT5G61510 64 / 4e-11 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G56460 57 / 6e-09 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013104 [exp] 399 / 9e-141 AT3G15090 310 / 3e-106 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10013106 [exp] 270 / 7e-91 AT3G15090 209 / 1e-67 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10030873 [exp] 108 / 3e-26 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 103 / 2e-24 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 86 / 2e-18 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 81 / 2e-16 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 77 / 3e-16 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 79 / 4e-16 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10011233 [exp] 78 / 6e-16 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373200 [exp] 546 / 0 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.016G136100 [exp] 109 / 9e-27 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 92 / 5e-21 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G140600 [exp] 72 / 8e-14 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G342800 [exp] 71 / 1e-13 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 71 / 2e-13 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G233800 [exp] 70 / 3e-13 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G452600 [exp] 68 / 2e-12 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 67 / 2e-12 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G036100 [exp] 67 / 3e-12 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10003495 pacid=23156267 polypeptide=Lus10003495 locus=Lus10003495.g ID=Lus10003495.BGIv1.0 annot-version=v1.0 ATGCGACTTTTGAGCACTCGGTTCGGTTCAGGACACGGGGCTGCCACTCAATTCTTGAATTCGCCTTTGTGCAGGCACATTGTTACCAGCTGCAGGGCTG TGATATTGCCACGGTTCGGAGGTCCGGAGGTGCTTGAGGTCCGTGACAGTGTCGATGTGCCGCCGCTGAAACCCAATGAGGTCCTGGTTCGTGCTCTGGC AGTTTCGGTCAATCCACTGGATACCAGAATGCGAGCAGGTTATGGACGTTCAGTATTTGAACCACTTCTTCCCCTTATCTTGGGTCGAGATGTTAGTGGT GAAGTTGCCGCTGTTGGATCATCAGTCCGATCACTAAGCGTGGGCCAAGAAGTTTTTGGTGCTCTGCATCCAACTGCAGTCAGGGGTACTTACACGGACT ACGCAGTGCTTTCAGAAGAAGAACTTGCCGAAAAACCAGCATCGCTTACACATGTGGAAGCAAGTGCGATTCCTTTTGCTGCACTGACAGCGTGGCGTGC GCTAAAGAGTACAGCCAGAATAGCTGAAGGGCAAAGGATATTAGTAGTTGGTGGAGGTGGTGCAGTTGGTTTTGCAGCCATCCAGCTTGGTGTCGCTGCT GGGTGCCATGTTACAACTACTTGTGGAGGTGAAAGTGTAAAGCGAATGATTGAAGCTGGTGTTGAACAGGCTGTTGACTACACTTCTGAGGACATTGAAC TAGCCATCAAAGGGAAGTTCGATGCTGTTCTGGACACTATTGGAATGCCAGAAACAGAAAGAATAGGTATCAACTTTCTGAAGAGAGGTGGACACTATAT GACACTTCAGGGTGAAGCAGCAGCGTTGACGGATAGATATGGGCTGATAGTTGGGCTTCCCATAGCTACTTCAATTCTATTGAAGAAACAGATTCAATAC CGCTATTCTCATGGCATAGAGTATTGGTGGACCTACATGAGAGCCGATTCTGATGGTTTAGCTGAGATACGTAGGCTATCTGAAGCGGGGAAGCTGAAAC AGCCGGTGGAGAAGACATTCCCTTTTGCACAAGTTAAAGAGGCTCACGAAGCAAAAGACACTAGAAAGATAACTGGTAAAGTGGTACTGGAACTCGACTG A
AA sequence Show only first row Show all	>Lus10003495 pacid=23156267 polypeptide=Lus10003495 locus=Lus10003495.g ID=Lus10003495.BGIv1.0 annot-version=v1.0 MRLLSTRFGSGHGAATQFLNSPLCRHIVTSCRAVILPRFGGPEVLEVRDSVDVPPLKPNEVLVRALAVSVNPLDTRMRAGYGRSVFEPLLPLILGRDVSG EVAAVGSSVRSLSVGQEVFGALHPTAVRGTYTDYAVLSEEELAEKPASLTHVEASAIPFAALTAWRALKSTARIAEGQRILVVGGGGAVGFAAIQLGVAA GCHVTTTCGGESVKRMIEAGVEQAVDYTSEDIELAIKGKFDAVLDTIGMPETERIGINFLKRGGHYMTLQGEAAALTDRYGLIVGLPIATSILLKKQIQY RYSHGIEYWWTYMRADSDGLAEIRRLSEAGKLKQPVEKTFPFAQVKEAHEAKDTRKITGKVVLELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15090			GroES-like zinc-binding alcoho...		Lus10003495 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	4.9	0.9227
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	9.9	0.8939
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	10.0	0.8967
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10024234 [exp]	11.5	0.8750
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	14.1	0.8627
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	14.7	0.8916
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	15.9	0.8886
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	20.3	0.8923
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	22.0	0.8784
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	25.5	0.8437

Compare expression of checked genes

Lus10003495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.