Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30630 467 / 2e-168 Coatomer epsilon subunit (.1) AT2G34840 464 / 2e-167 Coatomer epsilon subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023385 [exp] 492 / 3e-178 AT1G30630 495 / 5e-179 Coatomer epsilon subunit (.1) Lus10038422 [exp] 457 / 1e-164 AT1G30630 452 / 1e-162 Coatomer epsilon subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155800 [exp] 475 / 2e-171 AT1G30630 506 / 0.0 Coatomer epsilon subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04733 [flax] [poplar] Coatomer_E Coatomer epsilon subunit
Representative CDS sequence Show only first row Show all	>Lus10003497 pacid=23156260 polypeptide=Lus10003497 locus=Lus10003497.g ID=Lus10003497.BGIv1.0 annot-version=v1.0 ATGTCGACGGCGCCCGATCACCTCTTCAACCTCCGCAACAATTTCTACTTGGGGGCTTTTCAGGCTGCCATTAACAATAGTGACGTACCGAATCTCTCAC CGGAGGATGCCGTGGAGCGTGACTGCCTCGTCCACCGGTCTTACATCGCTCTTGGAAGCTATCAGCTCGTCATCAGCGAGATCGACGATAGCACGGCCAC TCCTCTCCAGGCCGTCAAATTGCTTGCCTTGTACCTCTCCAGCCCCGATAACAAGCAATCTGTAATTTCAAGCTTGAAAGAATGGCTCGCTGATTCGGCT ATTGGAAGTAATTCCATTTTGAGGCTGGTTGCTGGTATTATATTCATGAACGAAGAGGACTATAATGAGGCTCTGAAGCACACTCATGCCGGAGGTACCA TGGAACTGCATGCATTGAATGTGCAAATATTCATTAAGATGCACAGAACAGATTTTGGCGAGAGGCAGCTAAGAGTTATGCAACAGATTGATGAGGACCA CACCCTTACTCAGCTTGCAAATGCATGGCTGAATCTGGCAGTGGGTGGTTCAAAGATACAAGAAGCACTACTCATATTCCAAGATTTCTCAGAGAAATAT CCCATGACAGGATTGATGTTGAATGGAAAGGCTGATGCGAAGGATCCAGAAACGCTGGCCAACATGGTTGTATGTAGTCTTCATCTCGGCAAACCATCTT CACGTTATCTCAACCAGTTGAAGCTATCACATCCAGAGCATGTGCTTGTTAAGCGTATATCATCTGCAGAAGATACCTTCGAAAGAGCAGTTCAAACAGT TGCATAA
AA sequence Show only first row Show all	>Lus10003497 pacid=23156260 polypeptide=Lus10003497 locus=Lus10003497.g ID=Lus10003497.BGIv1.0 annot-version=v1.0 MSTAPDHLFNLRNNFYLGAFQAAINNSDVPNLSPEDAVERDCLVHRSYIALGSYQLVISEIDDSTATPLQAVKLLALYLSSPDNKQSVISSLKEWLADSA IGSNSILRLVAGIIFMNEEDYNEALKHTHAGGTMELHALNVQIFIKMHRTDFGERQLRVMQQIDEDHTLTQLANAWLNLAVGGSKIQEALLIFQDFSEKY PMTGLMLNGKADAKDPETLANMVVCSLHLGKPSSRYLNQLKLSHPEHVLVKRISSAEDTFERAVQTVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	0	1
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	1.0	0.9085
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	4.9	0.8864
AT2G26680			unknown protein		Lus10043275 [exp]	6.2	0.8725
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	7.0	0.8440
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	11.0	0.8272
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	11.2	0.8452
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	14.8	0.8162
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	15.0	0.8377
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	17.2	0.8602
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	18.0	0.8467

Compare expression of checked genes

Lus10003497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.