Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11730 456 / 2e-160 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 447 / 4e-157 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 438 / 3e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 426 / 9e-149 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 354 / 3e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 336 / 4e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 289 / 5e-95 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 282 / 6e-92 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 280 / 8e-91 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 276 / 5e-87 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009738 [exp] 677 / 0 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 442 / 7e-155 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 442 / 7e-155 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 444 / 3e-153 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 338 / 3e-113 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 337 / 4e-113 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 332 / 2e-111 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 330 / 6e-111 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 325 / 9e-109 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G195900 [exp] 501 / 3e-178 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 467 / 7e-165 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 459 / 9e-162 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 366 / 9e-125 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 335 / 3e-113 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 334 / 1e-112 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 334 / 2e-112 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 332 / 6e-112 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 332 / 2e-111 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 329 / 9e-111 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10003499 pacid=23169980 polypeptide=Lus10003499 locus=Lus10003499.g ID=Lus10003499.BGIv1.0 annot-version=v1.0 ATGGCATTGGAGGAAGGCAAGGATCATGTCAGACTTAATCCAACTAATAGGCCCTTGCCTTTGAAACTCCTCCAGTTTCTCTTGGTCTTTCTGGGATTTG GTCTTGGCATTTCTGTTGTCACCATGTTCACGGCTCAGTATGTTGGAGCTCCAAAATTTTCTGCGGTGGAAAGGCAAAACTTTGTGGTGCCATCTCCATT GGGTTTGCCCATCCTTAGAGAAGAGCCGTATACATTGGACAAGTGGACAAGGCCACCAGCAAATTTGATGCACCGTATGAATGACAATGAGTTGTTGTGG CGTGCTTCGTTTGTTCCTCGTATCAAAGAGTATCCTTTCAACAGGATTCCCAAAATTGCCTTCATGTTCTTGACGAAAGGCCCACTGCCCTTGGCACCTC TTTGGGAGAGTTTTTTCCATGGTCAGCAGGGTCTTTATTCTATCTATGTTCATGCTTTGCCACATTATGTCTCCAACTTCTCGTCATCATCAGTATTCTA CAATAGACAAATCCCAAGTCAGACAGTAGAATGGGGGAAAATGAGCATGTGTGAAGCTGAGAGGAGACTCCTCGCTAATGCCTTAATTGATGTATCCAAT GAATGGTTTGTTTTAGTGTCTGAGGCATGCATTCCTCTCCAAAACTTCAGCATCATATACCGTTACATATCCAGATCACGGTATAGCTTCATGGGTGCAT TTGATGAACAAGGTCCATATGGTAGAGGACGTTATAACAAGAATATGCAACCAGAGGTGACACTTGAACAATGGCGCAAAGGATCTCAATGGTTTGAAGT GAACCGAAGACTTGCCCTTGATATTATAGTGGACACCAAATACTACCCTAAATTCCGGGATTTCTGCCAACCAGCATGTTATGTAGACGAACATTACTTC CCTACAATGCTAAGCATCACAGTGCCACAACTATTAGCAAACAGAACTCTCACATGGACAGATTGGTCCAGGGGTGGAGCTCATCCAGCTACTTTTGGCA AGTCTGACATCACAGAGCAATTCTTCAGGAAAGTGTTTCAAGGGCAGTCCTGCCTTTACAACAACCAGCCATCCACACTTTGCTTTCTATTTGCTAGAAA GTTTGCTCCCAGTGCTTTAGAACCTCTTTTGAAACTATCCTCCAGATTTTTGGGGTATTGA
AA sequence Show only first row Show all	>Lus10003499 pacid=23169980 polypeptide=Lus10003499 locus=Lus10003499.g ID=Lus10003499.BGIv1.0 annot-version=v1.0 MALEEGKDHVRLNPTNRPLPLKLLQFLLVFLGFGLGISVVTMFTAQYVGAPKFSAVERQNFVVPSPLGLPILREEPYTLDKWTRPPANLMHRMNDNELLW RASFVPRIKEYPFNRIPKIAFMFLTKGPLPLAPLWESFFHGQQGLYSIYVHALPHYVSNFSSSSVFYNRQIPSQTVEWGKMSMCEAERRLLANALIDVSN EWFVLVSEACIPLQNFSIIYRYISRSRYSFMGAFDEQGPYGRGRYNKNMQPEVTLEQWRKGSQWFEVNRRLALDIIVDTKYYPKFRDFCQPACYVDEHYF PTMLSITVPQLLANRTLTWTDWSRGGAHPATFGKSDITEQFFRKVFQGQSCLYNNQPSTLCFLFARKFAPSALEPLLKLSSRFLGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10003499 [exp]	0	1
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033870 [exp]	13.6	0.5813
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	33.9	0.5625
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	44.6	0.5651
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	45.9	0.5590
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	48.8	0.5676
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10000192 [exp]	50.4	0.5241
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	55.1	0.5369
AT5G18260			RING/U-box superfamily protein...		Lus10035820 [exp]	55.4	0.5391
AT3G14880			unknown protein		Lus10013746 [exp]	103.2	0.5208
AT3G18790			unknown protein		Lus10008883 [exp]	139.1	0.4782

Compare expression of checked genes

Lus10003499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.