Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21330 150 / 7e-42 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 104 / 5e-26 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 102 / 2e-25 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 100 / 9e-25 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 92 / 6e-22 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 66 / 2e-11 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT1G66470 54 / 5e-08 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 54 / 6e-08 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT4G33880 54 / 7e-08 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G14760 54 / 7e-08 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009745 [exp] 415 / 2e-145 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 110 / 5e-28 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 109 / 1e-27 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 107 / 3e-27 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 100 / 2e-24 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 67 / 6e-13 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 69 / 2e-12 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10001068 [exp] 56 / 1e-08 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 55 / 5e-08 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191800 [exp] 142 / 2e-38 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 109 / 7e-28 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 105 / 2e-26 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 104 / 8e-26 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 103 / 1e-25 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 102 / 2e-25 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 98 / 2e-23 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 71 / 1e-14 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 71 / 2e-14 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.017G126800 [exp] 58 / 4e-09 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003500 pacid=23169982 polypeptide=Lus10003500 locus=Lus10003500.g ID=Lus10003500.BGIv1.0 annot-version=v1.0 ATGGATGGATCACTTGAAGCTTCAGCTGGTGGTGCTTGGGATCATGAATATTATCCTAGTTCTCCCTGGACCAACTTGTCCAATCTTAATTATGCCATTA TTAACTCCTCCCATGGCCATAACCAAGACTTGTTCCTCAATGAAGGCGCCCCACAGCCACTTAACTCAAACTATAAGGGGCAAGAACAAGGTACAATCAT GGACAAGTGCTCATCAGGCGGATCTCTAGACTCGCTGGATTGCTTGCTCTCAGCTACCAACAGCAATAATACCACCGACCACACGGTTGAAGACGACGAC CAAGGCATCTCCCTACTCTTCTCTTCTGAAAGCTTCTGGAACAACAACATAATCAACATCAGTAGTAGTACTACTCTTCAAGCTGCAGCAGTTTACTCCG GAGGCTCATCCCAACATCATCATCGCACTGTTGTTGGCAACAAGCGTAAAATTGTAAATATTCAACAAGACGGAAATGACAAAAATAACCCCCAGCCGAA GCCTAGGAAGACAAGACGGTATTCTCCACCAGCAGAGGCAGCAGGATCGTCATCATTCAACAGCAGCAATCACAACATCAACTTTCAGTCGGTTTCCCAC TCCGAGCCGGATCAGGAAGCCATTGCGCAGATGAAGGAAATGATGTACAGGGCGGCAGCTTTTCAGCCCGTAAACATGGGGGCGGAAGAGGTGGAGGCTG GTCGGAAGCCCAAGAGGAAGAATGTTAGGATATCGACGGACCCACAGACAGTGGCGGCGAGGAAGAGGAGGGAGAGGATCAGTGAGAGGATTAGGGTGCT ACAGAAGTTGGTCCCAGGCGGTACCAAAATGGATACTGCTTCCATGCTTGACGAGGCTGCTAATTACTTGAACTTCTTGAGGTCTCAAGTTAAGGCACTT GAACACAACCTACCACCTTCTTCTTCTTCTTCTTCTTCTTCTACAAATTTCTCCTTCTTCACAAATTATATTAGTATTAGCAATAATGGTGGTGGTGGTA GTAATAGTATGCTTCTTCCCATGCAAGCCAATAGTCTCCAAAACCCTGATAACCTTCTCCATCATCACCAACTTTGA
AA sequence Show only first row Show all	>Lus10003500 pacid=23169982 polypeptide=Lus10003500 locus=Lus10003500.g ID=Lus10003500.BGIv1.0 annot-version=v1.0 MDGSLEASAGGAWDHEYYPSSPWTNLSNLNYAIINSSHGHNQDLFLNEGAPQPLNSNYKGQEQGTIMDKCSSGGSLDSLDCLLSATNSNNTTDHTVEDDD QGISLLFSSESFWNNNIINISSSTTLQAAAVYSGGSSQHHHRTVVGNKRKIVNIQQDGNDKNNPQPKPRKTRRYSPPAEAAGSSSFNSSNHNINFQSVSH SEPDQEAIAQMKEMMYRAAAFQPVNMGAEEVEAGRKPKRKNVRISTDPQTVAARKRRERISERIRVLQKLVPGGTKMDTASMLDEAANYLNFLRSQVKAL EHNLPPSSSSSSSSTNFSFFTNYISISNNGGGGSNSMLLPMQANSLQNPDNLLHHHQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10003500 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033391 [exp]	9.5	0.7921
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10023127 [exp]	13.4	0.8046
					Lus10036826 [exp]	13.5	0.8170
					Lus10029181 [exp]	16.1	0.7598
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	21.0	0.7743
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	34.6	0.7211
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	44.8	0.7406
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	67.7	0.7490
					Lus10039776 [exp]	133.0	0.7229
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	138.2	0.6830

Compare expression of checked genes

Lus10003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.