Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72180 270 / 2e-84 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 227 / 1e-68 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G49660 215 / 3e-64 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G09970 214 / 4e-64 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G08590 207 / 3e-61 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 206 / 8e-61 Leucine-rich repeat protein kinase family protein (.1) AT3G19700 198 / 3e-58 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G61480 197 / 5e-58 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT2G33170 195 / 4e-57 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 195 / 5e-57 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009476 [exp] 467 / 2e-159 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 224 / 2e-67 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028232 [exp] 223 / 6e-67 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 222 / 8e-67 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 218 / 2e-65 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007232 [exp] 218 / 4e-65 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10012462 [exp] 201 / 3e-63 AT1G09970 391 / 2e-128 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028234 [exp] 209 / 3e-62 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007233 [exp] 209 / 5e-62 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078400 [exp] 306 / 8e-98 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 225 / 6e-68 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 222 / 7e-67 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G048800 [exp] 222 / 1e-66 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G106800 [exp] 219 / 1e-65 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 214 / 7e-64 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G107600 [exp] 213 / 1e-63 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G111700 [exp] 212 / 5e-63 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 210 / 2e-62 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.004G049100 [exp] 204 / 2e-60 AT1G28440 1387 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003503 pacid=23157266 polypeptide=Lus10003503 locus=Lus10003503.g ID=Lus10003503.BGIv1.0 annot-version=v1.0 ATGCCGAAAGGGAATTTATTCGAAGCGATTCACAGGAAGATCGATAATAAAGGCGGCGAATTGCCTGAATTGGATTGGATTCATAGGTACAGAATTGCAG TAGGAGCTGCTAAGGGGATTTCGTATCTTCACCACGATTGCTCTCCGCCTGTCATCCATCGAGACATCAAGTCGAGTAATGTGCTGCTCGACGATGATTA CGAGGCGAAGATTGCTGATTTCGGAGTTGCGAGGAAGCTTGCTGAGGTTTCTGAACAAGGGTGTGATCACAGCTGCTTTGCTGGTACGCATGGATACATT GCTCCTGAGATGGCGTATTCGATCAAGGTCACAGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTGCTGCTCGAGCTCATAACGGGGAAGAAACCGGTCG AGGAAGAGTACGGAGAAGGGAAAGACATAGTGTCGTGGGTTTCCAAGCATTTGAGGGACATTGACAGTGTTCTTAACAGGGTTCTGGACGGTTCTATCGC GAGTGATGAAACTGTGAAGGATGACATGCTGAAGGTATTGAAAATCGGGCTTCTTTGCACCACGAAGCTTCCCAGTCTCCGGCCGACGATGCGAGATGTG GTGAGGATGCTCGTCGACGCCGAGCCTTCCTGTTCGGCCGAGCCGTTCGACGATTCTTTGAATGTGGATGGTTCTGGGAAAGAAAATCAAAAGCCTTTCC TGGAATGA
AA sequence Show only first row Show all	>Lus10003503 pacid=23157266 polypeptide=Lus10003503 locus=Lus10003503.g ID=Lus10003503.BGIv1.0 annot-version=v1.0 MPKGNLFEAIHRKIDNKGGELPELDWIHRYRIAVGAAKGISYLHHDCSPPVIHRDIKSSNVLLDDDYEAKIADFGVARKLAEVSEQGCDHSCFAGTHGYI APEMAYSIKVTEKSDVYSFGVVLLELITGKKPVEEEYGEGKDIVSWVSKHLRDIDSVLNRVLDGSIASDETVKDDMLKVLKIGLLCTTKLPSLRPTMRDV VRMLVDAEPSCSAEPFDDSLNVDGSGKENQKPFLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	0	1
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	1.4	0.9364
AT1G72180			Leucine-rich receptor-like pro...		Lus10009476 [exp]	1.4	0.9470
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	2.2	0.9182
AT4G25670			unknown protein		Lus10014961 [exp]	4.9	0.9212
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	7.7	0.9168
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	10.3	0.8542
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10040032 [exp]	13.7	0.8770
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	13.7	0.9187
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	16.9	0.9159
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	18.2	0.8901

Compare expression of checked genes

Lus10003503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.