Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47840 300 / 9e-103 AMK2 adenosine monophosphate kinase (.1) AT5G35170 209 / 5e-64 adenylate kinase family protein (.1.2) AT5G26667 104 / 3e-27 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G63400 102 / 9e-27 ADK1 adenylate kinase 1 (.1.2) AT4G25280 100 / 3e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50370 100 / 5e-25 Adenylate kinase family protein (.1) AT3G60180 92 / 1e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37250 88 / 2e-20 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 80 / 2e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 56 / 3e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009228 [exp] 298 / 5e-102 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10037995 [exp] 291 / 3e-100 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009478 [exp] 265 / 2e-90 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 196 / 3e-59 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10016757 [exp] 106 / 2e-27 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 103 / 3e-26 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10031135 [exp] 94 / 6e-23 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031611 [exp] 92 / 2e-22 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033733 [exp] 92 / 1e-21 AT5G26667 336 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103400 [exp] 320 / 2e-110 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 315 / 1e-108 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 214 / 2e-65 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.006G189201 [exp] 122 / 4e-35 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 102 / 5e-26 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.014G104700 [exp] 99 / 4e-25 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G129000 [exp] 100 / 5e-25 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G092800 [exp] 99 / 6e-25 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.002G134600 [exp] 96 / 3e-24 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 95 / 2e-23 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10003504 pacid=23157279 polypeptide=Lus10003504 locus=Lus10003504.g ID=Lus10003504.BGIv1.0 annot-version=v1.0 ATGGCAGCAGGAGCTACAGCTTGTGCTAGCAGCTCCTACGGCGCGAAATTGAGAGCAAATTTCAGCAATTGCGGCGGCAGCTCCACGGAAACGGTGTCGT CTCTCTGTTTCAAGCCGTTCCGGAAGTCCGATTTCTCGCTCCGGATGGCGAATTCGAGAAATAGAGCTCAGGTTGTTTTAGCTTCCGGTAAGGCCGACCC ACCTCTTAGAATCATGATTTCCGGTGCTCCGGCGTCTGGTAAAGGTACTCAATGTGAGCTGATTACTAAAAAGTATGACTTGGTGCACATTGCTGCTGGA GACTTGCTGCGAGAAGAGATTGCTTCAGGGAGCGAGAATGGGAAGCGAGCCAAGGAATACATGGAGAAAGGGCAGTTGGTTCCTAATGAAATAGTTGTGA TGATGGTTAAAGACCGGCTGATGCAGCCCGACTCGCAAGAAAAAGGATGGCTATTAGATGGATACCCTCGGAGCATGTCTCAAGCAACTGCTCTCAAAGA ATACGGCTTTCAGCCTGATATTTTCATCGTCTTGGAAGTCCCAGAAGATATCCTTGTTGAAAGAGTTGTTGGGCGTAGACTGGACCCCGTGAAGTTGCGG TTGAATACCCATAACCAGAACGTGGAGGCAGTGCTTTCGATGTACGAGGATATTACTTTGAAGATCAAAGGGAATGTCTCCAAAGAAGAGGTATTTGCCC AAATCGACAGCACCCTGTCAAAATTGCTCGAGAGTCAAAAGGCAGCAACTCCTGAATCTCAAGCTGCTTGA
AA sequence Show only first row Show all	>Lus10003504 pacid=23157279 polypeptide=Lus10003504 locus=Lus10003504.g ID=Lus10003504.BGIv1.0 annot-version=v1.0 MAAGATACASSSYGAKLRANFSNCGGSSTETVSSLCFKPFRKSDFSLRMANSRNRAQVVLASGKADPPLRIMISGAPASGKGTQCELITKKYDLVHIAAG DLLREEIASGSENGKRAKEYMEKGQLVPNEIVVMMVKDRLMQPDSQEKGWLLDGYPRSMSQATALKEYGFQPDIFIVLEVPEDILVERVVGRRLDPVKLR LNTHNQNVEAVLSMYEDITLKIKGNVSKEEVFAQIDSTLSKLLESQKAATPESQAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	0	1
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031288 [exp]	3.5	0.7319
AT2G43945			unknown protein		Lus10026850 [exp]	4.9	0.7471
AT3G54130			Josephin family protein (.1)		Lus10027757 [exp]	8.9	0.6589
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10018712 [exp]	11.2	0.6511
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	17.0	0.7118
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10028164 [exp]	20.5	0.6580
					Lus10001828 [exp]	28.4	0.6743
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	30.0	0.7039
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	30.8	0.6258
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	31.3	0.6140

Compare expression of checked genes

Lus10003504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.