Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23710 188 / 1e-59 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009479 [exp] 440 / 1e-158 AT5G23710 213 / 2e-69 DNA binding;DNA-directed RNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G003700 [exp] 236 / 2e-78 AT5G23710 232 / 3e-77 DNA binding;DNA-directed RNA polymerases (.1) Potri.018G000800 [exp] 231 / 2e-76 AT5G23710 233 / 2e-77 DNA binding;DNA-directed RNA polymerases (.1) Potri.003G033600 [exp] 226 / 2e-74 AT5G23710 209 / 6e-68 DNA binding;DNA-directed RNA polymerases (.1) Potri.003G221301 [exp] 93 / 1e-23 AT5G23710 77 / 2e-17 DNA binding;DNA-directed RNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05158 [flax] [poplar] RNA_pol_Rpc34 RNA polymerase Rpc34 subunit
Representative CDS sequence Show only first row Show all	>Lus10003505 pacid=23157270 polypeptide=Lus10003505 locus=Lus10003505.g ID=Lus10003505.BGIv1.0 annot-version=v1.0 ATGAGCGGAGCACCGGAACCAATATCGTCGAACAAGAGAAAGCGGCCAGAGGCCGATGCTTTAACAGGAAACGACAAGATCATCTACTATCTAATCCGCG AGAAAGAAGATGTGGGGATAACCAAGTATTCAATCGGGAAAAATACCGCCATACCGACGGCTACAACCACCAAAAACTTGACAACCACCAAAATCTTGAA GAAACTACTCGAGAGAAATTTGATCAAGGAGGTAAAGAACGTGAAGAACAAAGGCAGCAACATGTACATGGCGTCCGAGTTCAAACCCTGTGCAGAGCTC ACTGGAGGCGACTGGTACAGCGATGGCAACCTCGACATCGAGTTCGTCAATGCCTTTAAAGAAAACTGCTTGAAGGTAGTGACGAAGTTGAAGATGGCCA CGCTGGAGAGCGTCATGGACTTTATGAAGTCGAACGGAATGTTTATGGTCGAGGTCACGAAGAAGCAGTTCCAAGAGATCTTAAAGGCTCTGGTTCTGGA CAATGCTTTGTTGGAAGTGAAGAGCACTGGTGTTGAGGAGTTTAGTTCCATACCTGTTGGGAAAGTTTGCTACAAGGCTGCTGCTGCTTCTGCTACTGGT GAGCGAGGAGTGGCCGCGGAGCCAAGATTGGGAGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCCAGGATAGGTAGCTGTACTCCTGATGGAGTCATCT CTCCCAAGACTTGTGTCTACTTCCAGAAATGGCTCGACTTTTGA
AA sequence Show only first row Show all	>Lus10003505 pacid=23157270 polypeptide=Lus10003505 locus=Lus10003505.g ID=Lus10003505.BGIv1.0 annot-version=v1.0 MSGAPEPISSNKRKRPEADALTGNDKIIYYLIREKEDVGITKYSIGKNTAIPTATTTKNLTTTKILKKLLERNLIKEVKNVKNKGSNMYMASEFKPCAEL TGGDWYSDGNLDIEFVNAFKENCLKVVTKLKMATLESVMDFMKSNGMFMVEVTKKQFQEILKALVLDNALLEVKSTGVEEFSSIPVGKVCYKAAAASATG ERGVAAEPRLGAMASIPCGVCPRIGSCTPDGVISPKTCVYFQKWLDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	0	1
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10014365 [exp]	2.4	0.8103
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	3.0	0.8223
AT4G31985			Ribosomal protein L39 family p...		Lus10019065 [exp]	3.5	0.8209
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	8.9	0.8227
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	9.1	0.8333
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	12.6	0.7734
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	15.9	0.7989
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	16.3	0.8124
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	19.7	0.7185
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	21.8	0.7771

Compare expression of checked genes

Lus10003505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.