Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 408 / 2e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22830 315 / 3e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G16860 260 / 4e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 251 / 5e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 251 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 239 / 8e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G46790 243 / 3e-73 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 236 / 1e-71 MEF21 mitochondrial editing factor 21 (.1) AT1G20230 240 / 2e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 236 / 5e-70 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 671 / 0 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 432 / 4e-147 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000043 [exp] 350 / 1e-120 AT1G71490 253 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 257 / 2e-78 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 253 / 3e-76 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 243 / 3e-76 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037362 [exp] 250 / 1e-75 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 251 / 6e-75 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008967 [exp] 249 / 4e-74 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 454 / 1e-153 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 268 / 4e-82 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 256 / 1e-78 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 260 / 2e-78 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 260 / 4e-78 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 258 / 2e-77 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G012500 [exp] 255 / 4e-77 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 254 / 1e-76 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 253 / 1e-76 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 252 / 3e-75 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003508 pacid=23157267 polypeptide=Lus10003508 locus=Lus10003508.g ID=Lus10003508.BGIv1.0 annot-version=v1.0 ATGATTTCTGGCTATAAAGACTTGGATCTATCTGAAGAAGCATCCTTCATATTCAGAGAGATGTTGCTTGCCAAGGTTGAACCGAATGACGTTACTATCG CGAGCATTCTTCCAATATGTGCTCAAATTGCGAATCTACGACATGGAAAGGAGTTCCATTCCTACATTCTAAAACGTCCGGTGTTTAAGGATTATTTACC TACATGGAATACGCTTATCGAGATGTATGCCAGGTCCGGGAAGCTTCCAGAAGCTAGAAAATTGTTTGATTTGATGAGCACCAAGGACAAGGTAACTTAT ACATCACTAATAGCTGCATATGGGAAACAGGGCTACGGAAAAACTGCACTCAAACTCTTCAAGGAAATGAACAGACAGGAAATCAAACCGGATTTTATCA CCATGGTTGAGGTTCTGTCAGCTTGTAGCCACTCCGGTCTAGTAACCGAAGGGGAAATGCGGTTTCGAGAAATGTTTAGTCTTTACGACATCATTCCTCG ATTGGAGCATTACGATTGCATGGTGGATCTCTTTGGGAGGGCAGGGTTGTTAAACCGAGCTAAGGAGACCGTGTTAACTATGCCTTACAGTCCGATGCCT GAAATATGGGCTACTCTCTTCGGAGCTTGCCGGATTTATGGAAATACAGAAATAGGGGAATGGGCAGCTAATCGGTTGCTAGAGATGAAACCGGAAAATT CGGGACATTATGTGTTGATTGCGAACATGTATGCTAATGCCGGAAGCTGGGATAAGCTGGCTAAAGTTCGAACCTTTATGAAGGATGTTGGGGTGAAGAA GTCTCCTGGATGTGCGTGGGTTGATGTGGGGTCCGGGTTTAGACGGTTCTTAGTAGGGGGTTGTTCTGAAGAACACGGAAGTGAACTTTATCATCTGTTG GATGGGATGACAGAGCTGATGAAAGATGTTGGTCATGATGCTTCTGATGATGTTAGCTCGGAAGATGAAGCATTACAGGCAACAAAGAGAAGGAGAATGG CTGTGGATCAATTGTCAAATCTCCCACTGGAAAATTCTAGCACTCTGAGTTTCCAAATGCAAGTGCATCGCTTGTTGAATGTTCCAGGGCAAGAAGAATC CCGCCAGCTTCAAGAGAAGCTGGAGAGAGCCTTGTCGGAGAACACGAAGGCTATCGAGGAGGCTCGGTCCGAAAAAGTAATGAAAGAATACTTAAAGGAA CACAAGAGAGCTGAAGAGAAACGTTCGAGAGCGGAGACCGAGGTCTTTGAGCTAAGCAAGATGCAAGCTAGGGAGGTCGAGGCGCTTTGCAAGCTGCACG CTAGGGAGGCCCAGGAGCAAAGCAAGCTGGAAGCTAGAGAGGTCGAGGAGCAATGCAAAATGCATGCTAGGGAGACCGAAGGTGCTTCGCAGAAGGCATG CTCCTAA
AA sequence Show only first row Show all	>Lus10003508 pacid=23157267 polypeptide=Lus10003508 locus=Lus10003508.g ID=Lus10003508.BGIv1.0 annot-version=v1.0 MISGYKDLDLSEEASFIFREMLLAKVEPNDVTIASILPICAQIANLRHGKEFHSYILKRPVFKDYLPTWNTLIEMYARSGKLPEARKLFDLMSTKDKVTY TSLIAAYGKQGYGKTALKLFKEMNRQEIKPDFITMVEVLSACSHSGLVTEGEMRFREMFSLYDIIPRLEHYDCMVDLFGRAGLLNRAKETVLTMPYSPMP EIWATLFGACRIYGNTEIGEWAANRLLEMKPENSGHYVLIANMYANAGSWDKLAKVRTFMKDVGVKKSPGCAWVDVGSGFRRFLVGGCSEEHGSELYHLL DGMTELMKDVGHDASDDVSSEDEALQATKRRRMAVDQLSNLPLENSSTLSFQMQVHRLLNVPGQEESRQLQEKLERALSENTKAIEEARSEKVMKEYLKE HKRAEEKRSRAETEVFELSKMQAREVEALCKLHAREAQEQSKLEAREVEEQCKMHARETEGASQKACS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10003508 [exp]	0	1
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	2.6	0.8129
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	16.9	0.7904
AT3G13000			Protein of unknown function, D...		Lus10037293 [exp]	19.0	0.7741
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	21.7	0.7760
AT2G17787			unknown protein		Lus10013567 [exp]	22.5	0.8036
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	22.6	0.7896
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10037677 [exp]	26.4	0.7557
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	27.2	0.7966
					Lus10043057 [exp]	31.0	0.7713
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	46.9	0.7693

Compare expression of checked genes

Lus10003508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.