Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22830 136 / 5e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G71490 125 / 4e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49740 62 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G04860 62 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 59 / 5e-10 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17630 57 / 2e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G18750 56 / 3e-09 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 56 / 5e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 55 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 54 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 370 / 3e-124 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 301 / 3e-100 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027100 [exp] 223 / 1e-73 AT1G22830 111 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10026460 [exp] 62 / 6e-11 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019278 [exp] 61 / 1e-10 AT3G49740 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 59 / 5e-10 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024199 [exp] 58 / 1e-09 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 57 / 2e-09 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011563 [exp] 56 / 3e-09 AT3G49740 340 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 173 / 4e-50 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 61 / 6e-11 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 58 / 8e-10 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G074500 [exp] 58 / 9e-10 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G354400 [exp] 57 / 2e-09 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 56 / 6e-09 AT3G22690 1050 / 0.0 unknown protein Potri.002G155100 [exp] 55 / 8e-09 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 55 / 9e-09 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 54 / 1e-08 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G137900 [exp] 54 / 1e-08 AT3G09040 421 / 3e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003509 pacid=23157285 polypeptide=Lus10003509 locus=Lus10003509.g ID=Lus10003509.BGIv1.0 annot-version=v1.0 ATGCCGCCTTCTTCACCTCGAGTGTCACTCAAGGGCTTGTTATCTGTAGCTGAGATACAAAAGTTTATACCTAGCAAGTGGAAGCAAATTGTTGCTACTA AGCCTGCTGATACTGTTATCGTCGAGCCTCTGGTTCGCCATACTTATGCTGTTAAGGATGGATACATCATGTTAAGCTTTTTAGTAACCTGCATTAAGGA TCTCACAAGCCAAGGCAATTTGTGCAACGCATTCGAAACATTTTCGTTAGTGCAACGACACGCGCGAACTCATCAAGACTTGCTCGTGGATTCGATTGCG TGTCTTTTGTTCGCTTGTGCTGATCCGAAATCATTGACTTGGCAAGGAGGAAGACAGCTCCACGGGCATATGATCTCGTTAGGATTAGAGAAAGATCGTG TTTTGGTACCGAAGCTCGTTACTTTCTACTCGAACTTCCAGTCCTTGGTTGACATTCATGCTATTGTTGAGAATGCGAATATCATGGACCCTTTGCCTTG GAATTTGCTCATTTCGGCGTATAATAGGAATGAGCTGTATGCAAAGGCTCTTTCTGCTTATATGGAGATGAGGAGTAAAGGAGTTAGACCTGATATTTCA CTTATCCATCGGTTCTGA
AA sequence Show only first row Show all	>Lus10003509 pacid=23157285 polypeptide=Lus10003509 locus=Lus10003509.g ID=Lus10003509.BGIv1.0 annot-version=v1.0 MPPSSPRVSLKGLLSVAEIQKFIPSKWKQIVATKPADTVIVEPLVRHTYAVKDGYIMLSFLVTCIKDLTSQGNLCNAFETFSLVQRHARTHQDLLVDSIA CLLFACADPKSLTWQGGRQLHGHMISLGLEKDRVLVPKLVTFYSNFQSLVDIHAIVENANIMDPLPWNLLISAYNRNELYAKALSAYMEMRSKGVRPDIS LIHRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22830			Tetratricopeptide repeat (TPR)...		Lus10003509 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10026201 [exp]	19.4	0.6506
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10006217 [exp]	38.5	0.6371
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	76.0	0.6099
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	218.5	0.5458
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	278.9	0.5301

Compare expression of checked genes

Lus10003509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.