Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 177 / 1e-51 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009488 [exp] 382 / 1e-132 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2) Lus10035769 [exp] 137 / 1e-36 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2) Lus10037346 [exp] 114 / 3e-28 AT1G33980 259 / 5e-81 Smg-4/UPF3 family protein (.1.2) Lus10027007 [exp] 66 / 1e-13 ND 41 / 8e-06 Lus10008346 [exp] 51 / 1e-07 ND / Lus10027099 [exp] 44 / 0.0001 AT3G13230 373 / 6e-131 RNA-binding KH domain-containing protein (.1) Lus10025489 [exp] 0 / 1 ND 53 / 2e-13
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077500 [exp] 169 / 2e-48 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2) Potri.003G005700 [exp] 161 / 1e-45 AT1G33980 256 / 3e-79 Smg-4/UPF3 family protein (.1.2) Potri.004G225800 [exp] 159 / 6e-45 AT1G33980 241 / 1e-73 Smg-4/UPF3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03467 [flax] [poplar] Smg4_UPF3 Smg-4/UPF3 family
Representative CDS sequence Show only first row Show all	>Lus10003510 pacid=23157272 polypeptide=Lus10003510 locus=Lus10003510.g ID=Lus10003510.BGIv1.0 annot-version=v1.0 ATGACGAAAGGAAATCCGAAGAAGGAAGCTTACGAGAGAACCAAAGTGGTGGTAAGGCATTTGCCGCCTTCACTCTCTCGTTCGGAGCTATTCTCTCACT TCGATCATCTCTTCTCCGACCGGGTCAATTGGGTCTCTTTCCGACCCGGAAAGTCCAGTAGGAACAGTCAGAATCAGAGGCATTCTCGTGCTTATATTGA CTTCAAGAGCCCTGGAGATGTTTTGGAGTTTGCACAGTTCTTCAATGGCCATAGATTTGTCAATGAGAAGGGTGCTCAGTGCTGTGCTGTAGTCGAATAC GCACCATCGCAGCGTGTTCCCAAGCCGTACGCTAAGGATAGTCGAGAAGGGACTTTTCTCAGAGATCCTCACTATCTGGAATTCCTCAAGCTGATTGCGA AGCCTGTGGAGGGTCTTGTGCACAGTTCCGAATTTCGCTTTGAAAGAAAAGAGGCTGAAGAAGCTGCGCCTAGAGCTCGAGGTTCTGCAAAGAGGTTAAA TAAGACCGGTAATTCCGAGAAGAAGAAGACTTTGCATGATAAAGAACGAAAGCAGAAAACTTCACGTGACCATGGCCGTGAAGCTAGTAAAAGGATGATA AAACACATCCTCTTAAGTCGCGAATCGCGTCTAAAGAAACCTTTGACAGCTATCTATCCTCAAGAAATAGATCATCATGGGCATGCAGAGGATGAGACAC CGTCTTTGGTTGTCAGTGATTCTGATCAAAGAAGAAATGCTTCGGAGAATCAGTTTATGAAGAAGGATAAAGCTGAGAAAAATTCAAGGCCGCACAGGAG GAAAATGGATAAACCAAGTCTTCGATCTGATCAACAACACAGTAATAAAGAACGTGATGAATCTCATCAGCTTCCTGCTGAAGGTAGAATGCGGCATATG CTCTGA
AA sequence Show only first row Show all	>Lus10003510 pacid=23157272 polypeptide=Lus10003510 locus=Lus10003510.g ID=Lus10003510.BGIv1.0 annot-version=v1.0 MTKGNPKKEAYERTKVVVRHLPPSLSRSELFSHFDHLFSDRVNWVSFRPGKSSRNSQNQRHSRAYIDFKSPGDVLEFAQFFNGHRFVNEKGAQCCAVVEY APSQRVPKPYAKDSREGTFLRDPHYLEFLKLIAKPVEGLVHSSEFRFERKEAEEAAPRARGSAKRLNKTGNSEKKKTLHDKERKQKTSRDHGREASKRMI KHILLSRESRLKKPLTAIYPQEIDHHGHAEDETPSLVVSDSDQRRNASENQFMKKDKAEKNSRPHRRKMDKPSLRSDQQHSNKERDESHQLPAEGRMRHM L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	3.7	0.8936
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	4.2	0.8702
					Lus10019353 [exp]	12.6	0.8583
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	13.4	0.8421
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006089 [exp]	15.2	0.7972
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	17.0	0.8272
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030867 [exp]	17.5	0.8348
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	17.7	0.8427
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	19.1	0.7795
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	20.2	0.8443

Compare expression of checked genes

Lus10003510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.