Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09900 516 / 0 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 503 / 2e-180 ATMES14 methyl esterase 14 (.1) AT1G26360 310 / 4e-103 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT3G29770 300 / 1e-99 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G69240 298 / 4e-98 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT5G58310 173 / 5e-52 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT4G16690 170 / 7e-51 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT2G23560 169 / 2e-50 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23610 167 / 2e-49 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT3G10870 162 / 8e-48 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005298 [exp] 566 / 0 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 456 / 4e-163 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10013193 [exp] 306 / 7e-102 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10030707 [exp] 305 / 2e-101 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 287 / 1e-94 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 281 / 9e-89 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10015532 [exp] 171 / 6e-51 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 165 / 9e-49 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10034253 [exp] 163 / 9e-48 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104700 [exp] 541 / 0 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.019G077400 [exp] 531 / 0 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.017G096900 [exp] 314 / 2e-105 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 311 / 3e-104 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 302 / 1e-100 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.007G036800 [exp] 182 / 2e-54 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107500 [exp] 176 / 5e-53 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 174 / 2e-52 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107200 [exp] 172 / 4e-51 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.019G131100 [exp] 165 / 6e-49 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10003511 pacid=23157287 polypeptide=Lus10003511 locus=Lus10003511.g ID=Lus10003511.BGIv1.0 annot-version=v1.0 ATGGGTAATCTGATTTGCAAGGCGAAGAAGGAGGGAGGAGCCAAAGGTAGCAATCTCCATGGATCAAGGAGGAAATCGTCGCAGAGGAAGCTACTGGCGG ATGAAGAGCTCCTACACAGGCAAGCTCTGTCAATGGCGCTTCACCAGCACCAGCTGTCTCAGAGGTTTGACGGATCCATGTCTAGAAGGATTGGGTCGAC GAGCGCCAGGAAGAAGAATCTTGCTGATGGTGGTGGTGCATTGGCCAATGGGAAACAACAGGAGAAGGTTCATGAGAATCTGGAGAATCTCAAGATAAAA ACTTTTGTACTAGTACATGGAGAAGGCTTTGGTGCCTGGTGTTGGTACAAAACTATTGCTCATTTGGAGGAAGTAGGACTAGTTCCAGTGGCCTTAGATC TAACTGGATCCGGCATTGACACAACAGATTCGAACTGTATCGAGACGTTGGCAGACTACTCGAAACCGTTGATTCGCTATCTCGAGAACCTTCCACAGGA CGAAAAGGTTATTTTGGTTGGTCACAGTACTGGAGGTGCATGCATCTCTTATGCATTGGAGCTCTTCCCTGAAAAGATATCGAAAGCTATTTTCGTATGC GCCACGATGGTCTCTGATGGTCAGAGACCCTTCGACGCATTCTCTGCTGAGCTTGGTTCTGCTGAGCTCTTTATGAAGGAGTCACAGTTTCTGGTTCATG GCAATGGGAAGGACAATCCTCCCACAGGATTCATGTTTGAGAAGCAGCTAATGAAAAGTTTGTACTTCAATCAATCACCAACAAAGGACATTGCACTGGC CTTGGTTTCCATGAGACCTTCACCGCTAGGTCCGACAATGGAGAAGCTGTCCTTGACACCAGAGAAGTACGGTACATCTCGCCGATTCTTCGTTCAGACG CTCGAAGATCATGCACTTTCTGCAGATGTTCAGGAGAAACTGGTGAGGGAGAACCCGCCCGAAAGTGTCTTCAAGATCAAAGGAAGCGACCATTGCCCCT TCTTTTCCAAGCCTCAGTCACTGCACAAGATTTTGGTTGAAATTGCTCAAATTGAGTAG
AA sequence Show only first row Show all	>Lus10003511 pacid=23157287 polypeptide=Lus10003511 locus=Lus10003511.g ID=Lus10003511.BGIv1.0 annot-version=v1.0 MGNLICKAKKEGGAKGSNLHGSRRKSSQRKLLADEELLHRQALSMALHQHQLSQRFDGSMSRRIGSTSARKKNLADGGGALANGKQQEKVHENLENLKIK TFVLVHGEGFGAWCWYKTIAHLEEVGLVPVALDLTGSGIDTTDSNCIETLADYSKPLIRYLENLPQDEKVILVGHSTGGACISYALELFPEKISKAIFVC ATMVSDGQRPFDAFSAELGSAELFMKESQFLVHGNGKDNPPTGFMFEKQLMKSLYFNQSPTKDIALALVSMRPSPLGPTMEKLSLTPEKYGTSRRFFVQT LEDHALSADVQEKLVRENPPESVFKIKGSDHCPFFSKPQSLHKILVEIAQIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	0	1
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	3.2	0.8737
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	8.0	0.8412
AT1G12650			unknown protein		Lus10024493 [exp]	10.5	0.8251
AT5G14030			translocon-associated protein ...		Lus10035166 [exp]	12.5	0.7733
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	13.0	0.8432
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	15.1	0.8294
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	16.7	0.8112
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	17.4	0.8488
AT5G03345			unknown protein		Lus10026529 [exp]	19.2	0.8482
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	19.4	0.8536

Compare expression of checked genes

Lus10003511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.