Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24160 76 / 2e-14 unknown protein AT1G70100 69 / 2e-12 unknown protein AT3G26050 69 / 3e-12 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 62 / 4e-10 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G27350 60 / 7e-10 unknown protein AT5G40700 58 / 2e-09 unknown protein AT1G23060 56 / 4e-08 unknown protein AT3G01710 54 / 1e-07 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002952 [exp] 452 / 2e-159 AT1G24160 77 / 1e-15 unknown protein Lus10029213 [exp] 73 / 2e-14 AT1G24160 135 / 2e-36 unknown protein Lus10010725 [exp] 74 / 5e-14 AT1G70100 213 / 2e-62 unknown protein Lus10037054 [exp] 67 / 1e-11 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10032115 [exp] 62 / 4e-10 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10014571 [exp] 57 / 1e-08 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075700 [exp] 110 / 8e-26 AT5G40700 74 / 1e-14 unknown protein Potri.013G101300 [exp] 107 / 5e-25 AT1G24160 71 / 7e-13 unknown protein Potri.010G113000 [exp] 74 / 1e-13 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G192800 [exp] 72 / 2e-13 AT1G70100 197 / 6e-57 unknown protein Potri.010G053200 [exp] 69 / 2e-12 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 68 / 5e-12 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G180900 [exp] 67 / 1e-11 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G038100 [exp] 67 / 1e-11 AT1G70100 196 / 4e-56 unknown protein Potri.001G336300 [exp] 66 / 3e-11 AT3G27350 124 / 1e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003514 pacid=23157286 polypeptide=Lus10003514 locus=Lus10003514.g ID=Lus10003514.BGIv1.0 annot-version=v1.0 ATGGACTCCTCGGGAGTGAAACGGAGGAAACGCCACGTCATGTGTTCTTGGCCCACAGGAGTCGTCCACGTGGCTGTCAGTTGGTTCCGTTGGCCTTCCG CTCCCATTTGCTTCTATTCCTTTCTTGCTTCATTCCTCTGCCAACTCTTCACTCTTTCCCAAAAGCGCTTAGTAAAACCGCCACAATTCGATCCAACGTC GAAACCCTACCGTCGGAATCTGAAAGTCCCAATTTTTCGCCGGCGAGAGAGGATATACCGAGACTGTCATCTTCCTTTCTTCTTGCCGCTGCTCCTTTTG CCTGGTAGAGCAGTGGGTCGGATTTTCGAACAGAGATGGAAATCGGGACTGACGAGAGTCTCTTGCACCGCGATTTTGCTGCCGGGAGCTGTTGAATTGT TTCCGCTGCTTTGGAGAATTGTAGATTCGGGGGAAATGGCGACTGAAGTGGAGGCTGCTGTTTCATGCTATGGCGAGGAATCGCAGGAGAAGGCATTCTG CATCTCTAAACTTGTGGATCACCGGTCAATATCGTTCGGGAGGTACGAAGCGGAGAATCTAGCGTGGGAGAAGTTCTCCATATTCTCCCCCAACAGACGC AAGGAGGAAGTGGAGAAGTCGACAGCTCCGGGTTTAGTTGCCCAGAAGAAGGCATTCTTTGAGGAATACTTCAAGGGTTTCAGAGCTATGAAGGGGTTGT TCAAAGGGCAGAAGCAAGGGGAAGCCGGTAGTTTACACTCTGGGCAAGAGAGCAATGCAGAGAAAGGAAATGAAATTGATACGGTTCGTGGGACAAAATT GAGCTATTCCCCCAGGACAAAGGATGTGAACCGGGTAGAACAAAGAAAGAAATACAACCCTGCCAAGGTAAATGACCAATCTTGCATGTTGAAATCAGGT AGCAAAATGAAGAAAGATGATGTGAAGAAAACTGGGGGGTTGTTGAAACCATCAGTGACTAAAACTGTTACGAAGAAACCAGTAAAAGAAGTAAATCCTG CCAAGTCTTCAGTGAAGAGTTCTACATTCAACCATGTCCCAACCCATCGAAAACTCGGGGAAGTTCAGAATGCAGTCCGAGATGTTCAAGCCAAACCAGC AAGAGAGAAGATGGTGGCACCTCCAAAGACAAAGAAAAGCTTGGGGAAGCCAGCTACTACTACAAAAGTTGTGCCTGTGTCAACTCAGGGGACAAGTGCA ACCAACGCCAGAATTGGAAGAGATCCCAAGCCTGCGCCAGCAAAGGTGACTGATATTTGTACGACTTCGAGTGCCAACAATGTTCGTAAGACTGAAGATG TTAAGTGCTCTAAAGCGATCGAGATCGTGGATAATGTGCCATAG
AA sequence Show only first row Show all	>Lus10003514 pacid=23157286 polypeptide=Lus10003514 locus=Lus10003514.g ID=Lus10003514.BGIv1.0 annot-version=v1.0 MDSSGVKRRKRHVMCSWPTGVVHVAVSWFRWPSAPICFYSFLASFLCQLFTLSQKRLVKPPQFDPTSKPYRRNLKVPIFRRRERIYRDCHLPFFLPLLLL PGRAVGRIFEQRWKSGLTRVSCTAILLPGAVELFPLLWRIVDSGEMATEVEAAVSCYGEESQEKAFCISKLVDHRSISFGRYEAENLAWEKFSIFSPNRR KEEVEKSTAPGLVAQKKAFFEEYFKGFRAMKGLFKGQKQGEAGSLHSGQESNAEKGNEIDTVRGTKLSYSPRTKDVNRVEQRKKYNPAKVNDQSCMLKSG SKMKKDDVKKTGGLLKPSVTKTVTKKPVKEVNPAKSSVKSSTFNHVPTHRKLGEVQNAVRDVQAKPAREKMVAPPKTKKSLGKPATTTKVVPVSTQGTSA TNARIGRDPKPAPAKVTDICTTSSANNVRKTEDVKCSKAIEIVDNVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24160			unknown protein		Lus10003514 [exp]	0	1
AT1G24160			unknown protein		Lus10002952 [exp]	3.2	0.8762
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	5.2	0.8925
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	7.4	0.9042
AT4G33945			ARM repeat superfamily protein...		Lus10027923 [exp]	12.8	0.8332
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	15.0	0.8973
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10013413 [exp]	16.9	0.8454
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	20.2	0.8899
					Lus10024121 [exp]	21.1	0.8804
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013063 [exp]	21.6	0.8605
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	23.9	0.8725

Compare expression of checked genes

Lus10003514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.