Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20090 66 / 3e-11 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 63 / 2e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53330 59 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 59 / 5e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 59 / 5e-09 RPF2 rna processing factor 2 (.1) AT5G59900 59 / 7e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 58 / 7e-09 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 57 / 1e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 57 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09820 57 / 1e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002951 [exp] 689 / 0 AT5G61990 80 / 7e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000015 [exp] 294 / 3e-99 AT3G09060 67 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 76 / 2e-14 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 74 / 6e-14 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 62 / 3e-10 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014660 [exp] 62 / 4e-10 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026218 [exp] 61 / 1e-09 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 61 / 1e-09 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004570 [exp] 61 / 2e-09 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075900 [exp] 221 / 1e-66 AT1G05670 89 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.014G121400 [exp] 74 / 9e-14 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 62 / 5e-10 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G250700 [exp] 61 / 1e-09 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 60 / 2e-09 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G234500 [exp] 60 / 3e-09 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 59 / 5e-09 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G090400 [exp] 58 / 9e-09 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 58 / 1e-08 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 57 / 1e-08 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003515 pacid=23157284 polypeptide=Lus10003515 locus=Lus10003515.g ID=Lus10003515.BGIv1.0 annot-version=v1.0 ATGGGCTTCCTAATCCGATCTCAAAAAAACCTTATCAGATCACTGTCACAATCCCACCCTTCTCTTTCTTCCCGCCTCTCTCATCTCACCCTCCCGCCAC TTTCCCTTTCAATCCCACCTCATCTCCCTAGGTCGAATCATGGCGGCTTTGTCAGCTCACTGTCAATTTTATCAACTTGCTTCCGATGTTACTCGTCGGT TTCCGCTGCTGCTTCGTGTCTCCCCTCCTCAGAAAAGCCACAGAAAAGTGTATACTTTTTCTCGGAGATTATTCAGCTGATCAGCTCCGGTGCTCCTGGT CTGGAATCAAAGCTGGATTCAATGCAATTAACCACCTTAGATCTCAGGTCCGTCAGGGAGATTCTTCGAGCTCTCAATAACTCAAAGGTATCCGCTTTCC GTTTCATTGATTGGATTGGAGTTCATCGCCCGGATTTCGTTAGCAACTCCAATATCCGCAACCTGCTAATCGATAATTGTGGCAGATGTGATGATTACGA AAAAATGAGCAGTCTTTTAGCTAGTTTGAACCAGAGGAACGTTTCTCTAACGAAAGATGCATTCGATTTCTTAGTTATTAATAAGAATGGAGATGAACGA CTAGATGAATCTGCTTTGATGGAAGCTGTAAAGAAGGTAGTTGGCATGCTGAGTGATGTAGGTGGGAGGGTTTACCTTACTGGTGTTCAATCCTTGGTCG AATTGCTTGCGAATTTGGTCTCGTTCAAAATGGCAAAGTTCGTGATTGGTTTATCGGACAAGAGAGTGTCTTATCACAGTGTATTGATCAAGGAAATGTG CAAGAAGCACGAGTTTGAACAAGCGATGAAGGAAATCGACGAGATGAAGGGATTCTACGGGGATGCATGCAATCCCAATTGTCGAAGCATTTACAATTAC ATGATCAGCACGATGCTCAAGGCCGGCAAGGAAGATGCTTCTGTGGAAGTTCTGCATGAGATGACGAGGAAAGGGCTTCCTCCGGATGCGTTGACTTTCG AGATACTTATATGCAATTCCGTGGCGAAGAAGGAGTTCGGGACTGTGATTAAGTTCTTTGACTCGATGAACGAGGAAGCTTATAGCTATGCGGTTGCTGT GAGCGAGAAGTTTAAGGGGTCCGGTGATCAGACCTACTGCATACTTGCGGAAATGTATAGGAGGAGAGGTGATCTGGTGATGTCGAAGAACATTCTTTGT GCGATGATGAGTAAAGGCCTGGCGCCGGATTTGTTTGTTTACGGGATGGTTTTAAGGAACCTCAAGGGTTCTGAATTCGAAGAACATGCTGTGGAGTTGG AAAAGCAGCATCAAAAGGTTCGATTTGGCAACTTCATGTAG
AA sequence Show only first row Show all	>Lus10003515 pacid=23157284 polypeptide=Lus10003515 locus=Lus10003515.g ID=Lus10003515.BGIv1.0 annot-version=v1.0 MGFLIRSQKNLIRSLSQSHPSLSSRLSHLTLPPLSLSIPPHLPRSNHGGFVSSLSILSTCFRCYSSVSAAASCLPSSEKPQKSVYFFSEIIQLISSGAPG LESKLDSMQLTTLDLRSVREILRALNNSKVSAFRFIDWIGVHRPDFVSNSNIRNLLIDNCGRCDDYEKMSSLLASLNQRNVSLTKDAFDFLVINKNGDER LDESALMEAVKKVVGMLSDVGGRVYLTGVQSLVELLANLVSFKMAKFVIGLSDKRVSYHSVLIKEMCKKHEFEQAMKEIDEMKGFYGDACNPNCRSIYNY MISTMLKAGKEDASVEVLHEMTRKGLPPDALTFEILICNSVAKKEFGTVIKFFDSMNEEAYSYAVAVSEKFKGSGDQTYCILAEMYRRRGDLVMSKNILC AMMSKGLAPDLFVYGMVLRNLKGSEFEEHAVELEKQHQKVRFGNFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003515 [exp]	0	1
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	3.7	0.7801
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	7.1	0.8024
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10000015 [exp]	13.7	0.7276
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	16.4	0.7725
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	17.3	0.7919
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10041853 [exp]	19.3	0.7847
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10002094 [exp]	22.0	0.6784
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	23.7	0.7914
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	30.2	0.7656
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	30.8	0.7494

Compare expression of checked genes

Lus10003515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.