Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03980 99 / 5e-24 SGNH hydrolase-type esterase superfamily protein (.1) AT1G28570 79 / 3e-17 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28640 77 / 3e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45910 77 / 3e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 74 / 5e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 72 / 9e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28650 73 / 1e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 72 / 2e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 70 / 7e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28670 70 / 1e-13 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011338 [exp] 283 / 2e-95 AT1G28600 177 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 88 / 7e-20 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 88 / 1e-19 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 84 / 5e-18 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013938 [exp] 82 / 6e-18 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 76 / 1e-15 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019947 [exp] 74 / 4e-15 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10024085 [exp] 72 / 3e-14 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10009325 [exp] 69 / 7e-14 AT5G03980 80 / 3e-17 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054400 [exp] 93 / 6e-22 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 92 / 2e-21 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 91 / 7e-21 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 91 / 7e-21 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 89 / 2e-20 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 87 / 8e-20 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G054300 [exp] 86 / 4e-19 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G225100 [exp] 85 / 6e-19 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G463900 [exp] 80 / 3e-17 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 76 / 1e-16 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003516 pacid=23157275 polypeptide=Lus10003516 locus=Lus10003516.g ID=Lus10003516.BGIv1.0 annot-version=v1.0 ATGCCTGACTTCCGGCCGGCCTATCCCGCCGCCGTCGTTAGACTCCATGTACTACTTTGGAAACGGCAATCCCGCCACCTCCGATGGCCTTCTCATGCTT CGGCACTCAACCTGCCATCTCCGAATGAGGATTTCAGGCAGCAGAAGACGTTCGATTACGATGTTTCCACTGCCATGGATGTTACCTTCTTTGTACGGAA TGGGATGCCGCATGTTCAGATCATCCGTAACCGATCGCTGCATTCGCAGTTGGATTCTTTCAGCGATTCCCTTGATTCTCTCTGGTCCTCTCCTCAAGAT CAGCCCAATCCTGTTTCAATTGGGAAAGCGCTGAAGAAATCCGTTTTCGTTCTGGATCAAATTGGGAGTTCTGATTATCAGTATTTCTTCCTCATCAATG GCAAATCTGTAAGGGAGAGTTTAAGTTATATGGTCTCAGTTGTCTTCACCATCCAACACATTGTACAGAAACTGATAGAAAAGGGAGCTACAAAACTGTT AGCAACAGGAACTCTCCCAATGGGTTGTCTTCCAGGCTACCTAACTCTCCTTCAAAACCAGACTTCGGGTGACTACGATCGACACGGCTGTCTGGCATCG ATGAACAAGTTCTCGAGCATCCACAACGAACGTCTACAAAGAGGGATTTCGGAGCTGAGGGAGAAGCACCCGGACGTGCAGGTCGAATGGGATTTAACAG TCATAAAGGGCCCTGAAAAAAAAAAGGGATTTAACAGTCATAACAATAAATAA
AA sequence Show only first row Show all	>Lus10003516 pacid=23157275 polypeptide=Lus10003516 locus=Lus10003516.g ID=Lus10003516.BGIv1.0 annot-version=v1.0 MPDFRPAYPAAVVRLHVLLWKRQSRHLRWPSHASALNLPSPNEDFRQQKTFDYDVSTAMDVTFFVRNGMPHVQIIRNRSLHSQLDSFSDSLDSLWSSPQD QPNPVSIGKALKKSVFVLDQIGSSDYQYFFLINGKSVRESLSYMVSVVFTIQHIVQKLIEKGATKLLATGTLPMGCLPGYLTLLQNQTSGDYDRHGCLAS MNKFSSIHNERLQRGISELREKHPDVQVEWDLTVIKGPEKKKGFNSHNNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03980			SGNH hydrolase-type esterase s...		Lus10003516 [exp]	0	1

Compare expression of checked genes

Lus10003516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.