Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1168 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 1137 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 1074 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 831 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002950 [exp] 1825 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10023340 [exp] 1026 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038471 [exp] 1006 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 844 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 0 / 1 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072800 [exp] 1332 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G003400 [exp] 1154 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.004G227200 [exp] 1151 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 848 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF04685 [flax] [poplar] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [flax] [poplar] Gal_mutarotase PF12215 [flax] [poplar] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Lus10003517 pacid=23157274 polypeptide=Lus10003517 locus=Lus10003517.g ID=Lus10003517.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGAACGGTTTCCTCGAAGAACAAGACAACAACAAGGCTGTTGCTACAAAGATGGTGAATCCAGGGAAGCCACCTGCATTGACATGGCAAA GAAAGCTCAAAGATGAACCAGTTCCTCCTTTGCCTTTCAGCCTTGCTTTGAAAGATATTGCTCATATGCTTCCAATAGGGGTGAGACTGATTCGTCACAC CAAGGCCGAAGCTGCAAAAGGAAGGGAAACCATATTCGATTTCCTCAGAACTCATCATGTCACTGGCGATCACGGCGTCCCTTTAGGTGGTATCGGAACA GGAAGCATTGGAAGAAGCTACAAAGGAGAGTTCCAGAATTTCAAGCTACTGCCTTTGGTACATGAAGAAAAACCGGTTTTGGCTAACCAATTCTCTGCCT TTGTTTCTCGTCCCGATGGAACGAAGTCTTCATCTGTTTTATGCTCTAGGAAGCCAGAGTTCCCAGCCAAGCCCGGTTCTGGCATCGAGTCATGGGATTG GAATCTTGCCGGTGACAAGAGTACATACCATGCTTTGTTTCCCAGGGCTTGGACATCTTATGATGGCGAACCTGATCCAGATCTCAAAATCGTGTCTCGA CAGATGTCGCCTTTCATTCCTCACAACTACAAGGAGAGCAGCTTTCCAATAACCGTGTTCACATTTACGCTGTACAATACTGGAAAGACCTCTGCAGATG TCACCTTGCTCTTCACTTGGGCAAATTCACTTGGTGGGCAATCTGGATTTACAGGTCAACATTACAACACAAAGATGAAGACAAAAGATAGAGTTCATGG AGTTACCTTAAACCACAAGACAGCAAAGGGTCACCCTCAACTCACATTTGCAATGGCAGCTCAGGAAACAGACGATGTCCGAGTATCCGAATGCCCTTAC TTCCTCGTATCGGGACCCTCGAAATCGAATGGAATCACAGCTAAAGACATGTGGGACGAGATTAAAACGCATGGAACATTCGATAACTTGCGCTGCAAGA ATCTACCTTCAGAACCAGGGTCATCAATTGGAGCAGCCATATCAGCTTCTATTACTGTCCCTTCTGGTTCTGTCAAAACCGTCACATTTTCGTTAGCATG GGACAGTCCAGAAGTCAAATTCAGTGGAAAAAGTTACTATAGGCGTTACACGAAGTTCTACAGTTCTTTAGGGGACGCTGCAGCGAAGCTGGCTCGTGAT GCGATTCTTGATCATGCTGATTGGGAGGCTCAGATAGAAGCATGGCAGAATCCCATCCTTGAAGACAAAAGGCTACCGGAATGGTATCCAGTTACTCTCT TCAATGAACTCTATTACCTAAATGCTGGAGGGACGATATGGACAGATGGATCACTTCCACTGCAAAGCTTAACATCCATCAGAGACAGAAAGTTCTCCCT GGACGGATCGGTCCTCGAAACGAAGCACCAGCACAACAATCATGCTACGAAGAAGAATGACACGGCAGTTGAAATCCTGGAGAGGATGGTGTCGACCTAC GAGCAAATGAACGACAGAACAACATCATCTTCGAACCCAGCTTTCGGGACATACTTGATGAACAGAGGAGAAGAAAACGTTGGAAACTTCCTCTACCTCG AAGGCTCCGAGTATCTCATGTTCAACACCTATGACGTCCACTTCTACTCGTCCTTCGCGATCCTCATGCTGTTCCCAAAACTGGAGCTAAACTTCCAGAG GGGCTTTGCAGCAGCTGTGATGATGCATGATCCCACCAAGATGCAGATCATGAGCGACGGGAGGGTGGTTCAAAAGAAGATGCTTGGTGCGGTCCCACAC GATATGGGGCTAAACGATCCATGGTTCGAGATGAATGCCTATAACTTGTTCAGCACGGCAAGGTGGAAAGACTTGAACCCCAAGTTTGTTCTGCAGATAT ATAGAGATATTGTGGCTACTGGGGATATGGGGTTTGCTAGAGCTGTCTGGCCTTCAGTGTACATGGCGATGGCGTATATGGAGCAGTTCGATAAAGATGA GGATGGGATGATCGAGAACGAAGGGTTCCCTGATCAGACTTATGATGCTTGGCCTGTTCATGGTGTGAGCTCCTACTGTGGTGGACTTTGGGTAGCTGCA TTACAGGCTACTTCTGCATTGGCTCGAGTGATTGGGGAAGAGGATTCCGCGAGATACTTCTGGATCAGGTACCTGGAGGCTAAAGGTGTTTATGAGAAGC TTTGGAATGGGTCATACTTTAACTATGACAGCAGTGGCAATCCTTCCATCCATGCTGATCAGTTATCTGGTCAATGGTATGCAAGAGCCACGGGGCTTTC GCCGATTGTCGACGAGGAGAAAGTGAAGAGTGTTCTTGAGAAGATCTACAACTACAATGTGATGAAGTACAAAGGAGGGACAAGGGGAGCAGTGAATGGG ATGCTACCGGATGGAAAAGTTGATACATCGGGAATGCAGTCCAAGGAGATATGGCCTGGAGTCACATATGCGCTTGCTGCCTCCATGATTCAGGAACAAA TGGCTGACATTGGCTTCAACACAGCCTTTGGTGTCTATCAAGCCGCCTGGTCCGAATCCGGCCTCGGATACTCATTCCAGGTCCCAGAAGGATGGAACAC AGATGAAAAGTACAGGTCGCTATGCTACATGAGGCCATTGGCAATATGGGGGATGCAATGGGCACTCACAAGGGAAAAGGTCTTCAACGAAGGAGGTGTT GTTGTTGTTGATCAACCATTTCGTAAAGAAGAAGACGATGAAGAGGGAAACTTTGAAGATCTTTCATGGTATATGAGACATCATACTGGATTCAAAAAGG TTGCTAAGTTGCTGCAAGTGCCTAAGGATGAGAGTAAGAGAAGGTGTCAACATCAAGGTCAGGGTGTGCAACTCTCGTACCACCCTGCTGGGAGGGATGC GTCAAGGTCCAGTGAGTGGGCGGCGGCCGTCTCACAATGGAGGTCGAGGGTCCGATTTGATTTTGATGTCAACATAAGGGAGTTTGGGACCCTAACACCA AGGATGCAAGTCTCTTACACCACCTTCATGGTGGGATGCCCCAAGGTCCGGTGGGTGGGAGGTGACCCTCCTGTAATAGTAGATGGTCACCGACAACGAA TAGGAGGTCCAATTTGA
AA sequence Show only first row Show all	>Lus10003517 pacid=23157274 polypeptide=Lus10003517 locus=Lus10003517.g ID=Lus10003517.BGIv1.0 annot-version=v1.0 MAIENGFLEEQDNNKAVATKMVNPGKPPALTWQRKLKDEPVPPLPFSLALKDIAHMLPIGVRLIRHTKAEAAKGRETIFDFLRTHHVTGDHGVPLGGIGT GSIGRSYKGEFQNFKLLPLVHEEKPVLANQFSAFVSRPDGTKSSSVLCSRKPEFPAKPGSGIESWDWNLAGDKSTYHALFPRAWTSYDGEPDPDLKIVSR QMSPFIPHNYKESSFPITVFTFTLYNTGKTSADVTLLFTWANSLGGQSGFTGQHYNTKMKTKDRVHGVTLNHKTAKGHPQLTFAMAAQETDDVRVSECPY FLVSGPSKSNGITAKDMWDEIKTHGTFDNLRCKNLPSEPGSSIGAAISASITVPSGSVKTVTFSLAWDSPEVKFSGKSYYRRYTKFYSSLGDAAAKLARD AILDHADWEAQIEAWQNPILEDKRLPEWYPVTLFNELYYLNAGGTIWTDGSLPLQSLTSIRDRKFSLDGSVLETKHQHNNHATKKNDTAVEILERMVSTY EQMNDRTTSSSNPAFGTYLMNRGEENVGNFLYLEGSEYLMFNTYDVHFYSSFAILMLFPKLELNFQRGFAAAVMMHDPTKMQIMSDGRVVQKKMLGAVPH DMGLNDPWFEMNAYNLFSTARWKDLNPKFVLQIYRDIVATGDMGFARAVWPSVYMAMAYMEQFDKDEDGMIENEGFPDQTYDAWPVHGVSSYCGGLWVAA LQATSALARVIGEEDSARYFWIRYLEAKGVYEKLWNGSYFNYDSSGNPSIHADQLSGQWYARATGLSPIVDEEKVKSVLEKIYNYNVMKYKGGTRGAVNG MLPDGKVDTSGMQSKEIWPGVTYALAASMIQEQMADIGFNTAFGVYQAAWSESGLGYSFQVPEGWNTDEKYRSLCYMRPLAIWGMQWALTREKVFNEGGV VVVDQPFRKEEDDEEGNFEDLSWYMRHHTGFKKVAKLLQVPKDESKRRCQHQGQGVQLSYHPAGRDASRSSEWAAAVSQWRSRVRFDFDVNIREFGTLTP RMQVSYTTFMVGCPKVRWVGGDPPVIVDGHRQRIGGPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	0	1
AT5G43150			unknown protein		Lus10010543 [exp]	2.0	0.9145
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	2.8	0.8998
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	3.2	0.8902
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10013159 [exp]	4.6	0.8628
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	5.5	0.8970
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	6.0	0.8805
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	8.2	0.8957
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	9.8	0.8538
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	10.2	0.8826
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	10.4	0.8334

Compare expression of checked genes

Lus10003517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.