Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71440 635 / 0 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) AT3G10220 55 / 3e-08 EMB2804 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) AT4G33520 53 / 5e-07 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002949 [exp] 783 / 0 AT1G71440 503 / 2e-176 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Lus10002948 [exp] 207 / 3e-64 AT1G71440 161 / 7e-48 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Lus10023777 [exp] 61 / 2e-09 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10042405 [exp] 57 / 1e-08 AT3G10220 376 / 2e-133 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Lus10026266 [exp] 56 / 2e-08 AT3G10220 378 / 2e-134 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072700 [exp] 752 / 0 AT1G71440 646 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Potri.001G205400 [exp] 58 / 2e-08 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G041400 [exp] 54 / 5e-08 AT3G10220 388 / 3e-138 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Potri.003G024000 [exp] 56 / 9e-08 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.005G007900 [exp] 50 / 5e-06 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.016G029900 [exp] 48 / 2e-05 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF01302 [flax] [poplar] CAP_GLY CAP-Gly domain
Representative CDS sequence Show only first row Show all	>Lus10003518 pacid=23157260 polypeptide=Lus10003518 locus=Lus10003518.g ID=Lus10003518.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTCAAACTCGGCCAGCGAGTCCACTCAGCGGGCGATTCCCGCCGAATCGGCACCGTCAAATATGTAGGAACAGTGGAAGGCTACTTCGGAA CTTGGGTCGGCGTGGATTGGGACACCGGTGAAGGCAAACACGACGGGACTGTGAACGGAACTCGTTACTTCCAAGCTAGATCGGAGCGTTCTGGTTCTCT AGTACGGCCACATAACTTGAGTTCGGGCATTTCGTTCCTTGAAGCTCTGTGCATCAGGTATAAAGGCCATGCCACTAAAGAAGAAGAAGAGGGGATGTAT GTGCTTTCGACTACAAACAGAAGGGTGTCTGTTGAATTCGTCGGTAAAGAGAAGATTCAAGATAAGCTGAGCCGGTTTGAGGAGCTCACCAATGCGTCTC TGTCATTTCTTGGTGTCAGTACTCCTGGTTCATCAACAGAGATTGCTTCTACTTTGCCAAATATAAGGGAGTTGGACTTGACTGGAAATTTACTTTCACA ATGGAAGGATACAGGCATCATATGTGAGCAATTGCCATCTCTTACAGCGCTCAACTTGTCTCACAATTTAATGGCAGATGTCGTGACTGGCCTACCGGGA TTGAGTAGTATCCGCACTCTGGTTTTGAACTGTACTGGTGTGAAGTGGACACAGGTAGAAGAACTTGAACATCTGTTGCCAGTAATAGAGGAGCTACACC TTATGGGGAATGGTATAAGTGAAATTAAGGCCACATCTTCATCAGTTCCAAGATTTGAATCCTTGAGGCTTCTGAATTTGGAAGATAACTGTATAGATGA GTGGAATGAAATCATAAAGATTTCCATGTTGAGAAGCTTAGAGCATCTTCAATTGAACAAGAACAGGTTGAAGAATGTCTTCTATCCAGATGACGCAACA GTAAAGAAAATGTTAAATAGTTCCGAATCTCAAAAGAAACATTGTATTCCTTTTGAGAACCTCCGTTGTCTTCTCTTGGCAAGTAACAACATTGGGGATC TCGCATCAATCGACTCACTGAACTTGTTCGCCAGCCTGATGGATGTCAGAATATCTGAAAATCCAATAACCGAGCCCTCAAGTGGCGGTATTCCAAGATA TGTTCTGGTTGCACGGTTGTCCAAGGTTGAACTGCTGAATGGAAGTGAGATCCGTGCTCGTGACAGGAAGGAATGTGAGATTCGGTATGTTCGCTTAGTT ATGTCGCAGCTGCATGGCAAACCAGATGAAAAACAACTTCATCCAAGGTTCACAGAGCTGAAGCGTCTTCACAGTATCGAAGATGAAAGACCATCGATTG AGCCCTCCGGCCCTCAGAAGATGGCTACTGGATTATTGTCAATCACCCTCAAGTGTGTGGGTGCTTCCATGAGCGAGAAAGCTCCAATGACAAAGAAGCT ACCTGCCTCGACGACGGTTGGCAAGCTAAAGATTCTCTGTGAAAGCTTTTTCAAACTCAGATCAGTCAAGCTGAGACTGTTCCTAGAGGAACAAGGCTGT CCTTTGCCGGTACTACTAGACGACGAGATGGCCACACTGGTGGATATTGGTGCTGGCACTGGATCCACCATTCTTGTTGGAATCCCAATAGCGGCCGGGA TGTTACTGCCTGTAACAGGGACGGTGCTGACTCCATCTATAGCTGGAGGGCTCATGGGATTGAAGGAGAAGGACGGCGTTCAGGCAGCGCATGGTTACAT ATTCTGTAATGATCATGCTTTAAAGGACAAATTTGAGTGTCTAAAACATGACAATTAA
AA sequence Show only first row Show all	>Lus10003518 pacid=23157260 polypeptide=Lus10003518 locus=Lus10003518.g ID=Lus10003518.BGIv1.0 annot-version=v1.0 MASFKLGQRVHSAGDSRRIGTVKYVGTVEGYFGTWVGVDWDTGEGKHDGTVNGTRYFQARSERSGSLVRPHNLSSGISFLEALCIRYKGHATKEEEEGMY VLSTTNRRVSVEFVGKEKIQDKLSRFEELTNASLSFLGVSTPGSSTEIASTLPNIRELDLTGNLLSQWKDTGIICEQLPSLTALNLSHNLMADVVTGLPG LSSIRTLVLNCTGVKWTQVEELEHLLPVIEELHLMGNGISEIKATSSSVPRFESLRLLNLEDNCIDEWNEIIKISMLRSLEHLQLNKNRLKNVFYPDDAT VKKMLNSSESQKKHCIPFENLRCLLLASNNIGDLASIDSLNLFASLMDVRISENPITEPSSGGIPRYVLVARLSKVELLNGSEIRARDRKECEIRYVRLV MSQLHGKPDEKQLHPRFTELKRLHSIEDERPSIEPSGPQKMATGLLSITLKCVGASMSEKAPMTKKLPASTTVGKLKILCESFFKLRSVKLRLFLEEQGC PLPVLLDDEMATLVDIGAGTGSTILVGIPIAAGMLLPVTGTVLTPSIAGGLMGLKEKDGVQAAHGYIFCNDHALKDKFECLKHDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10003518 [exp]	0	1
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	7.7	0.8452
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	9.1	0.8808
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	12.2	0.8533
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	15.2	0.8496
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	15.7	0.8417
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	17.9	0.8488
AT3G53320			unknown protein		Lus10023170 [exp]	20.7	0.8401
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	21.8	0.8270
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	24.2	0.8414
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	26.8	0.8331

Compare expression of checked genes

Lus10003518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.