Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10070 295 / 2e-88 KH domain-containing protein (.1) AT1G33680 266 / 2e-77 KH domain-containing protein (.1) AT2G25970 176 / 2e-46 KH domain-containing protein (.1) AT5G50940 65 / 3e-11 RNA-binding KH domain-containing protein (.1) AT5G04430 62 / 6e-10 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT3G04610 56 / 7e-08 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT1G14170 48 / 2e-05 RNA-binding KH domain-containing protein (.1.2.3) AT5G15270 46 / 9e-05 RNA-binding KH domain-containing protein (.1.2) AT5G53060 44 / 0.0005 RNA-binding KH domain-containing protein (.1.2) AT2G22600 44 / 0.0005 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002947 [exp] 1000 / 0 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10004445 [exp] 171 / 3e-47 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10020998 [exp] 171 / 4e-45 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 170 / 5e-45 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10013531 [exp] 117 / 4e-27 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10033557 [exp] 65 / 1e-10 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10037932 [exp] 61 / 1e-09 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10038665 [exp] 59 / 9e-09 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10005232 [exp] 59 / 1e-08 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072500 [exp] 420 / 2e-135 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.013G099800 [exp] 418 / 6e-135 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.006G231800 [exp] 189 / 1e-50 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.018G055300 [exp] 174 / 9e-46 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.004G123400 [exp] 62 / 8e-10 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 58 / 2e-08 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G230500 [exp] 57 / 2e-08 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 57 / 3e-08 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G042500 [exp] 56 / 9e-08 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 51 / 4e-06 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10003519 pacid=23157259 polypeptide=Lus10003519 locus=Lus10003519.g ID=Lus10003519.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAGAGGTTGCAGCCCCGCCGGCGCCTTCGAGTCCTGCACTCCTTCCGGATCACAAGCGGAAGCATGACGAGTTGGAGGAACAGCTGCCCA TCGAAGCTCCTCGCTCTGAAGATGAGAAGAAGTCCGGCGATGTTGTGGAGGAAGAAAAGGAGGACCTTGATTCGTGTGCAATCGATGCGGATTCGCAGGA GCCTAAGCGGGCTAGGGTTGATGATAAGACTCCGGACGAGCCAGTTGGTCAGAACGGTTTTGGGGAAGGAAAGTCAGATGAAGATGCTAAGGGGCATGTT GATGAGCAAAATGGTAAGACTGAGCTGCCGGAAGAGAGTGATCCTCAACCTGCTTCTGAGAGTGCTCAACCTGCCTCAGATGGTGCTCTGGAGACCGGAA AACACAATGATGAGGAAGTAGTTGGCGAAGAAGCTGATGATATAGATAATAAGAAGACTGCTGAAAACAAATTAGAACTGGCAGAGGGCATCGAGCTTGG TATAGCCGAGGAGCTCTCAAAACGGGAAGATGAGCAACTGGTACAAGATGCTGGAGAAACTGTATCTGACGGTCAGACTACATCTCGAAAGACTGAAGTT CCTAATGATAAGGTTGGAGTTCTTATTGGCAAGGGTGGGGATACTATTCGTTTCCTCCAGCAAAATTCTGGGGCAAAAATTCAGATAATGAGGGATGCAG AAGCTGATCCTCGTTGCACAACAAGGCCAGTAGAAATCATAGGGACACTAGCTAGTATAAGCAAGGCTGAGAAGCTGATCCATGCTGTTATAGCCGAGGT GGCTAACCTTTATCCTGCTACTAGTTATCTTACTTTTTTCGATAGTTGTTTCTTCCAGGCTTCTGTTGGGGGTTCCCCTTCACTTGTAGCAAGGGGCCAT CCTAGTGCTCAGTCTACTGGAGTTCCAGACCAACTCGAGATGCAAGTTCCAAATGAGAAGGTTGGTTTAATCATAGGAAAAGGTGGAGAAACTATCAAGG GCCTCCAAACAAAAACTGGAGCGCGTATTCAGTTAATTCCTCAACATCTTCCTGAAGGAGATGGATCAAAAGAAAGGACTGTGCGTGTGACTGGTGATAG GGCTCAAATTGAAATGGCAAGAGAACTGATTAAGGAAGTTATGAGTCAGAATGTGAGGCAATCATCAAATTCTGGCGGTTATAACCAGCAGCAATCATAC AGATCTCGTGGACTCAATGATAGGGGCCATTACGGTCCCCGAGGACCTCATCCGGCACAACCAATGCCTTACGATTATCACCAACGAGGACCATATCTGC CTCACGGCATGCACTACCCGCCACCTCCCAGTTACGGAAATTACCCACCCCAACACATGGGTCCACGAAGTAACTATGGTTTGGGTTGGGAGCAGCGACC TCCCCCACCAAGTAGCGGCGGGTACGATTACTACGGTGGTCAAAGAGGACATATGTCCGACCACCCCGCCTCTGCAACTGTTTCCGGGCACCACCCTCAC GGTCCTGCTCCTGCCATGGGTCCTCCTCTGTCGTCACAGACAAATTACGTTTACGGGCAGCCTCAGCCTCATGGGTCTGATTACGGTAATCAAGCTTCTT ATTCGCAGCCGGTACCTCAACAAGGCTATGACAATCATGCTCCAGTGCACAATCATTACGGACATGCTAGCTCTCAGCCAGGTTATCCTCCTGCAGCTTA TCAACAGTACGGTAAGCAATCATCTTACGGCATGCAAGCAGCACCAGGTCAGCAGCCACCTCAACAATATTCCGCTAGCCAGCCATATGGTCAAGGTGCA GCAGCAACTCAGCAGCAATATCCTTACACATCTACTGCTCCGGTTCAACAAGGATATCCTCCGTATGGTGCCGCAACTGCAATGGCTGCTGATGGCTATA ATCAAGCCGCTCCTCCTGCTTCAGGCGTGGGATTTGCTCCGCAGGCCTACGGCCAAACTGCCGGACAGCAACCAGCAGCTCAACAAGGGGATCCTCAGCA GGCTGGCTATGCACAAGGTACTGCTGCAGCTTCCTACGGATCATACCCGGGTTCGCAAGGGTATCCTGATCAAACCACTTCAAATGCTGCTGGCTATGGT TATCAAGCACAAGATCCTGCTTATGCACAACCTGCTGCTGGATCAACGTACGGTGCACAACCTACTGCTGGATCAACGTACGGTGCACAACCTGCTGCTG GACAACAACAGGTTTACGCTCAACCAACAGCAACGGCAGCACCAACGCAACCAAGCTACGACCAGTCGGCGGGTAGCTACACTGCCCCTGCTGCTCCTGG GAGCACTCCATCTCAGCCTGCAGCAGCGTATCCTCAATATGATTCTGCCCAGATGCATGCTGCTGCACCTCATTGA
AA sequence Show only first row Show all	>Lus10003519 pacid=23157259 polypeptide=Lus10003519 locus=Lus10003519.g ID=Lus10003519.BGIv1.0 annot-version=v1.0 MAEEEVAAPPAPSSPALLPDHKRKHDELEEQLPIEAPRSEDEKKSGDVVEEEKEDLDSCAIDADSQEPKRARVDDKTPDEPVGQNGFGEGKSDEDAKGHV DEQNGKTELPEESDPQPASESAQPASDGALETGKHNDEEVVGEEADDIDNKKTAENKLELAEGIELGIAEELSKREDEQLVQDAGETVSDGQTTSRKTEV PNDKVGVLIGKGGDTIRFLQQNSGAKIQIMRDAEADPRCTTRPVEIIGTLASISKAEKLIHAVIAEVANLYPATSYLTFFDSCFFQASVGGSPSLVARGH PSAQSTGVPDQLEMQVPNEKVGLIIGKGGETIKGLQTKTGARIQLIPQHLPEGDGSKERTVRVTGDRAQIEMARELIKEVMSQNVRQSSNSGGYNQQQSY RSRGLNDRGHYGPRGPHPAQPMPYDYHQRGPYLPHGMHYPPPPSYGNYPPQHMGPRSNYGLGWEQRPPPPSSGGYDYYGGQRGHMSDHPASATVSGHHPH GPAPAMGPPLSSQTNYVYGQPQPHGSDYGNQASYSQPVPQQGYDNHAPVHNHYGHASSQPGYPPAAYQQYGKQSSYGMQAAPGQQPPQQYSASQPYGQGA AATQQQYPYTSTAPVQQGYPPYGAATAMAADGYNQAAPPASGVGFAPQAYGQTAGQQPAAQQGDPQQAGYAQGTAAASYGSYPGSQGYPDQTTSNAAGYG YQAQDPAYAQPAAGSTYGAQPTAGSTYGAQPAAGQQQVYAQPTATAAPTQPSYDQSAGSYTAPAAPGSTPSQPAAAYPQYDSAQMHAAAPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10070			KH domain-containing protein (...		Lus10003519 [exp]	0	1
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	1.4	0.9048
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	5.3	0.8900
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	6.9	0.8583
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	16.7	0.8260
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	17.2	0.8602
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	18.9	0.8761
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	22.3	0.8664
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	23.4	0.8778
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	24.7	0.8503
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	26.5	0.8699

Compare expression of checked genes

Lus10003519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.