Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31480 1006 / 0 SGR2 shoot gravitropism 2 (SGR2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041056 [exp] 1151 / 0 AT1G31480 1115 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10002946 [exp] 282 / 1e-87 AT1G31480 200 / 7e-58 shoot gravitropism 2 (SGR2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072300 [exp] 1067 / 0 AT1G31480 1168 / 0.0 shoot gravitropism 2 (SGR2) (.1) Potri.013G099700 [exp] 1063 / 0 AT1G31480 1154 / 0.0 shoot gravitropism 2 (SGR2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02862 [flax] [poplar] DDHD DDHD domain
Representative CDS sequence Show only first row Show all	>Lus10003520 pacid=23157265 polypeptide=Lus10003520 locus=Lus10003520.g ID=Lus10003520.BGIv1.0 annot-version=v1.0 ATGGAGACGAATCCTGAAGCTTCTGTGGAAGCAACGCCTGATTTGCTGAGGAATACGCCGTCCAACATTGCGCGGTTGGAGGATGTGATAGAGCACTCGG AAGGTCGGCAGAAGTATCATGCACAGACTACAAGTCCCTCTGATGGTGGTGATGTGAGGTGGTATTTTTGTAAGGTCCCTCTAGCTCTAAAAGAGTTAGC TGCCTCAGTTCCTCGAACAGAAGTAGTAGAAAAGGGGGAATATTTTCGGTTTGGAATGAGGGATTCTCTTGCGATTGAGGCCTCATTCTTGCAGAAGGAG GAGGAGCTGCTTTCTATGTGGTGGAAAGAATACGCAGAGTGTAGCGAAGGTCCAAGGGGCAGACCGTCTTCAAGCAAGAAGATAAATTTGGAAGCATCTC ATATGTTTGATGTAGAAGAGGAAAGAGTTGGTGTGCCTGTGAAAGGAGGACTTTATGAGGTGGATTTGGTAAGGAGACATTGTTTTCCTGTCTACTGGAA CGGAGAAAATTGGCGTGTTTTAAGAGGTCATTGGTTTGCTCGTAAAGGGGGGTTAGATTGGTTGCCAGTACGAGAAGATGTTGCTGAACAGTTGGAAGTT GCATACCGCAACCAGGTTTGGCATCGTAGGACATTTCAACCCTCTGGGCTCTTTGCTGCTCGTGTTGAACTGCAAGGATCTACACCAGGGCTACATGCAC TTTTTATGGGTGAAGATGATTCATGGGAGGCTTGGCTCAATGCTGATGCTTCTGGCGTTGCTAGTATCGTTAATTTTAGCGGAAATGGGATCAAGCTTAG GCGTGGTTATTCTCCTTCGAGCTCAACGAAGCCAACTCAGGATGAATTGCGGCAGCAGAAGGAGGAGGAAATGGATGATTACTGCTCACAGGTTCCCGTA CGGCATGTGGTGTTCATGGTTCATGGTATTGGTCAAAGGTTGGAGAAATCTAATTTGGTGGATGATGTTGGCACTTATCGCCACATTACTGCAAGTCTTG CTGAACGCCATTTAACTTCTCACCAACTCGCTGCACAGCGCGTCCTCTTTATTCCATGCCAGGTGTCGAATCAATTGAACTGTTTGTATCTGAAGTTCCT CAAGCGGAATCCCAGTTATGATGGAAAGGTTTCCATATATGGTCATTCTTTGGGGAGTGTTCTCTCTTATGATATTCTCTGCCATCAAGACAATCTGTCA TCGCCATTTCCTATGGAATGGATGTACAAAGAACATCTTTCTACTGAGGTGAATGATGACTCGTCAATGCACAACCCTTCATACACTTCAGAGGCAATAA ACTCCAGTGATGAGGTACAGACGAGAGACAAATCGAATCCAGTGCATGCAGATGGAGCTGCTGAAGATACTTCCACAACCTCAAGTTCTTCGCGGCATAG AGATGAATTAGATGGCTTGTCGGTAGAGTCAGGGCAACCTGAAGGTGTTTCTCTTGTAAACAACTCTGGTGGAATCCTTACTGAGGAGAAAGATGGGGCA GGTGAAGATGCCAGTCCATCAGGTGACGGTTCAGTCGAAAGACTGGAAAACGATCCCACGGAAGGCTGCAAAACTGATGATGTCAAAGAAATTGAAACGT TGAAGGAAGAGATAGAATTGCTGAAAGCGAAAATAGCAGAACTGGAATTGAAGAGCGGAACTGGTATGTTGCTTCGTATCATCATTATGCCGTTTCACTT GTTTTGGTTAATGAGATGGGTGATATCATCTATGGTTTATCGTGCCAAAACAGAAAGTAAGGAAATACCTTCGATGGAACAGAACCAGTCGACCTATAAG AATACACATACCAGTCACCAAAGTGAACCACAGAACTACACTCCATACATCAAGTACACGAAACTCGAGTTCAGGGTAGACACGTTCTTTGCCGTTGGTT CCCCTCTCGGAGTATTCCTCGCTCTTCGTAACATTCGCATTGGCATCGGGAAAGGGCAAGGGTATTGGGTAGAAGAGAATATCACAGAGGAGATACCAGC CTGTAGGCAAATGTTCAACATTTTTCACTCATTCGATCCTGTAGCATACAGAATAGAACCACTTGTGTGTAAAGAATACATCGACAAGCGTCCAGTCATT GTTCCTTATCACAGAGGCGGGAAGCGTTTGCACATTGGATTTCAAGAATTTTCCGAAGATATAGCTGCTCGTTCTCAGGCCATCAAGGATCGTTTGAACT CTGTTAAAGTTCTTACAATCTGCCAGTCGAAAACTGAAAAGGTCTCAGATGAAAGAGAGGAAAATGTTGAAGAGAACAGAGAGAGAACGTACGGCTCTCT CATGATGGAGAGGTTGACTGGAAGTGAAGAAGGGAGAATAGATCACATGCTTCAGGATAAGACGTTTGAACATCCATATATTCAAGCTATTGGAGCACAC ACGAACTATTGGAGGGATAGCGACACTGCACTCTTCATTCTGAAACACTTGTACAGAGGTATAACCGACGAACCATCAGATCAGGATGACGCTGAGACCA GCGGAGGCGTGGATGATGACTCGAAAGATGAGAGTGGTGGCTTCACGGCTTGGCGGGATCGAAGAGGGTTGGCTGAGGCAGAACTTCCTTTGACATTCTC TGACCGGTTAACGGTCAAGAACTTCTCCAGGAAAGCCAAGAAATTCCTGAGGCAATAG
AA sequence Show only first row Show all	>Lus10003520 pacid=23157265 polypeptide=Lus10003520 locus=Lus10003520.g ID=Lus10003520.BGIv1.0 annot-version=v1.0 METNPEASVEATPDLLRNTPSNIARLEDVIEHSEGRQKYHAQTTSPSDGGDVRWYFCKVPLALKELAASVPRTEVVEKGEYFRFGMRDSLAIEASFLQKE EELLSMWWKEYAECSEGPRGRPSSSKKINLEASHMFDVEEERVGVPVKGGLYEVDLVRRHCFPVYWNGENWRVLRGHWFARKGGLDWLPVREDVAEQLEV AYRNQVWHRRTFQPSGLFAARVELQGSTPGLHALFMGEDDSWEAWLNADASGVASIVNFSGNGIKLRRGYSPSSSTKPTQDELRQQKEEEMDDYCSQVPV RHVVFMVHGIGQRLEKSNLVDDVGTYRHITASLAERHLTSHQLAAQRVLFIPCQVSNQLNCLYLKFLKRNPSYDGKVSIYGHSLGSVLSYDILCHQDNLS SPFPMEWMYKEHLSTEVNDDSSMHNPSYTSEAINSSDEVQTRDKSNPVHADGAAEDTSTTSSSSRHRDELDGLSVESGQPEGVSLVNNSGGILTEEKDGA GEDASPSGDGSVERLENDPTEGCKTDDVKEIETLKEEIELLKAKIAELELKSGTGMLLRIIIMPFHLFWLMRWVISSMVYRAKTESKEIPSMEQNQSTYK NTHTSHQSEPQNYTPYIKYTKLEFRVDTFFAVGSPLGVFLALRNIRIGIGKGQGYWVEENITEEIPACRQMFNIFHSFDPVAYRIEPLVCKEYIDKRPVI VPYHRGGKRLHIGFQEFSEDIAARSQAIKDRLNSVKVLTICQSKTEKVSDEREENVEENRERTYGSLMMERLTGSEEGRIDHMLQDKTFEHPYIQAIGAH TNYWRDSDTALFILKHLYRGITDEPSDQDDAETSGGVDDDSKDESGGFTAWRDRRGLAEAELPLTFSDRLTVKNFSRKAKKFLRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10003520 [exp]	0	1
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	3.7	0.9004
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10000294 [exp]	15.9	0.8301
AT5G17070			unknown protein		Lus10002137 [exp]	16.0	0.8750
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	20.4	0.8891
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	26.6	0.8872
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10007278 [exp]	29.1	0.8422
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	35.1	0.8635
AT3G09010			Protein kinase superfamily pro...		Lus10001212 [exp]	41.7	0.8709
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10001214 [exp]	43.9	0.8332
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	44.0	0.8739

Compare expression of checked genes

Lus10003520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.