Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11840 468 / 2e-163 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT1G67280 428 / 2e-147 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT4G10170 200 / 4e-60 SNARE-like superfamily protein (.1.2) AT1G33475 171 / 3e-49 SNARE-like superfamily protein (.1) AT1G08110 66 / 2e-12 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) AT5G52990 58 / 3e-09 SNARE-like superfamily protein (.1) AT4G27840 56 / 2e-08 SNARE-like superfamily protein (.1) AT3G54300 45 / 6e-05 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT4G15780 44 / 0.0002 ATVAMP724 vesicle-associated membrane protein 724 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002943 [exp] 502 / 1e-177 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002944 [exp] 460 / 2e-161 AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) Lus10043235 [exp] 431 / 2e-148 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10011115 [exp] 425 / 8e-146 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10038612 [exp] 357 / 4e-119 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10000007 [exp] 139 / 3e-39 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6) Lus10021429 [exp] 72 / 3e-14 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10016138 [exp] 71 / 1e-13 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10043431 [exp] 44 / 0.0003 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013200 [exp] 490 / 2e-172 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.006G160600 [exp] 436 / 1e-150 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G084800 [exp] 434 / 9e-150 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G042100 [exp] 397 / 4e-135 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.013G094900 [exp] 258 / 3e-82 AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) Potri.003G048600 [exp] 249 / 6e-79 AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) Potri.009G007200 [exp] 74 / 1e-14 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.006G239802 [exp] 90 / 1e-05 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.008G019400 [exp] 45 / 5e-05 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.008G209100 [exp] 45 / 6e-05 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10003523 pacid=23157263 polypeptide=Lus10003523 locus=Lus10003523.g ID=Lus10003523.BGIv1.0 annot-version=v1.0 ATGGAGAAGACAGTTCATTATTGCTGTGTCTCGAAGGCTAATCGAGCCATGTATGTGTACAGCAGGGGAGACCAAGAAGAGATTGAGCAGTTGGCTCAAC TGTGTTTAGTGAATGCACCTGCATACCACAGATGGTATTTTGAAACCATAGGGAAAAGAACATTTGGGTTCTTGATGGAAGATGGTTTTGTTTACTTGGC CATAGTTGATGAAGGCCTTAGGAATTCCAGCTTGCTCCGGTTTCTCGAGTACGTTAGAGACGAATTCAAGAAGGTAGCTAAAAAAGGTTCGAGGGGAAGC TTTTCAGGGCTGAACTCTGTCTTACAAGAGCAGCTAGTGCCTGTTATCAGTCAACTGATCAACTCGTTGGAGCATATTGCTTCCCGCGGCCATGAATGGA ACGGGTTGTTATCTCCTTCGACCAGTGGCGGCCAGATCGAGCTTGCCAATTGCACCAAGGTTCCGTTGTTGGGGAAGCAAGATAAGAAGAAGTCTAAGGA TCATATGATCGCGATGCGGGGGGATGTTGATGATGGGCAGGAAAAATCTTCGAGCGAGTCAACCGTGCTAGATCCTAGTAATCTAAATGCAGGTTCCCCG CAGCAAAAGGATTCAGTCTCAACGAGGAGTATTAGACCAAGCTCTCAGACTATTCGGAAGAAATGGTGGCGGCAAATGGGGTTAGGGCGGGGTCCACACG CTGATGGACAGCTGTCACAAGTGATAATATATACAGACACAGTACCAACTACCAACTCGGATCAGAAACGCACACTCTCTAGACTCTTCTTCCCTCATTT CTCAGTCTCTAGCTATTCCCTTTCCACCATGGCTGAAGCTGCAGCTATCGCTCCTCCTAGCGCTGAATTGTTGGAATTTCCCAAGAAGGACAAGCGTCGG ATGCTCCACGCCGTCTATCGCGTCGGCGATCTTGATCGGACCATTCAGTTCTACACTGAAGGTCTGGGGATGAAGCTGCTTAGGAAGAGAGACATTCCAG AGGAGAAATACTCCAATGCTTTCCTTGGTTTTGGTCCTGAAGATTCAAACTTCGTCGTCGAGCTGACTTACAATTATGGAGTGACCTCCTATGATATTGG GACTGGATTTGGGCACTTTGCTATTGCTACCCAAGATGTTTACAAGCTAGTAGAGAACGTTCGTGCTAAGGGTGGAAGTGTAACTAGGGAGCCTGGCCCA GTCAAAGGTGGAAACAGTGTCATTGCGTTTGTTAAGGATCATGATGGTTACACTTTCGAGCTCATCCAACGAGGTCCAACTCCCGAGCCTCTCTGCCAAG TTATGCTTCGTGTCGGAGACCTCCAACGTTCTATCAAGTTCTACGAGAAAGCCTTGGGGATGAAGCTGTTGAGGACAATTGATAGGCCGGAATACAAGTA CACATTGGCCATGATGGGGTATGCCGAAGAGGTTGAGACAACTGTTGTGGAGTTGACTTACAACTACGGCGTGACTGAATACACCAAGGGGAATGCATAT GCTCAGATTGCAATCGGCACAGACGATGTCTACAAAAGTGCTGAGGTCGTAAACCATGTGATCCAAGAAGTCGGTGGCGGGAAAATAACTCGACAACCTG GACCCATTCCGGGGATCAACACCAAGATTACTTCTTTCCTAGACCCTGATGGCTGGAAAACTGTGTTGGTTGACAATGAAGACTTTGTCAAGGAGTTGCA GTGA
AA sequence Show only first row Show all	>Lus10003523 pacid=23157263 polypeptide=Lus10003523 locus=Lus10003523.g ID=Lus10003523.BGIv1.0 annot-version=v1.0 MEKTVHYCCVSKANRAMYVYSRGDQEEIEQLAQLCLVNAPAYHRWYFETIGKRTFGFLMEDGFVYLAIVDEGLRNSSLLRFLEYVRDEFKKVAKKGSRGS FSGLNSVLQEQLVPVISQLINSLEHIASRGHEWNGLLSPSTSGGQIELANCTKVPLLGKQDKKKSKDHMIAMRGDVDDGQEKSSSESTVLDPSNLNAGSP QQKDSVSTRSIRPSSQTIRKKWWRQMGLGRGPHADGQLSQVIIYTDTVPTTNSDQKRTLSRLFFPHFSVSSYSLSTMAEAAAIAPPSAELLEFPKKDKRR MLHAVYRVGDLDRTIQFYTEGLGMKLLRKRDIPEEKYSNAFLGFGPEDSNFVVELTYNYGVTSYDIGTGFGHFAIATQDVYKLVENVRAKGGSVTREPGP VKGGNSVIAFVKDHDGYTFELIQRGPTPEPLCQVMLRVGDLQRSIKFYEKALGMKLLRTIDRPEYKYTLAMMGYAEEVETTVVELTYNYGVTEYTKGNAY AQIAIGTDDVYKSAEVVNHVIQEVGGGKITRQPGPIPGINTKITSFLDPDGWKTVLVDNEDFVKELQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	0	1
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10014277 [exp]	1.0	0.9141
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	4.5	0.8843
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039785 [exp]	7.1	0.8408
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	9.8	0.8541
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	10.0	0.8654
AT1G66080			unknown protein		Lus10031356 [exp]	10.2	0.8827
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Lus10020221 [exp]	11.0	0.8353
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	12.0	0.8421
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	12.0	0.8461
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	12.6	0.8763

Compare expression of checked genes

Lus10003523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.