Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62050 481 / 7e-166 Ankyrin repeat family protein (.1) AT1G11740 365 / 1e-120 ankyrin repeat family protein (.1) AT3G24210 298 / 8e-95 Ankyrin repeat family protein (.1) AT1G04780 222 / 1e-65 Ankyrin repeat family protein (.1) AT3G04470 216 / 1e-63 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002942 [exp] 715 / 0 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 215 / 5e-63 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 213 / 2e-62 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 211 / 4e-61 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 214 / 8e-61 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 150 / 2e-39 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 124 / 1e-32 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10027960 [exp] 115 / 2e-28 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013500 [exp] 509 / 2e-177 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 508 / 3e-177 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 223 / 6e-66 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 220 / 4e-65 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 213 / 5e-62 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.019G019700 [exp] 212 / 7e-62 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10003524 pacid=23157282 polypeptide=Lus10003524 locus=Lus10003524.g ID=Lus10003524.BGIv1.0 annot-version=v1.0 ATGGCGCCTCCGCCTCCCTCGCCTCCTCTCCTCCTCTCCGCCCTTCGCAACATGCGTGACTTCTACATGGAGATATCGTTCCACTTCGAGAGCTCTGTCA TCCCCTTCGTCGGCAAGATCGCCCCTTCCGACACTTATAAGATCTGGAAGCGAGATGGCAACCTCCGCGCCGACACTACTCTAGCCGGATTTGACGGATT AAAAATCCAGCGCGCCGATCAAAGCTTCCTCTTCCTCGGTGACGGCGAACAATCCCATGGAATCCCCTCCGGTTCCCTCCTTGTACTCAATCACAGCGAG AGGAAAATCCACGACGCCTTCGAGACCGCCGGAGCGCCACTGAGCGAATCGGACATCGCCGGATTCTGCTCTCAGACTAGCGTATACAGGCCAGGGATGG ACGTCACAGAGGCTCAATTGGTCGGCCGGACAAACTGGCGGAGGCAAGAGAAGTTCGAATCCGTCGGAGAGTGGAAAGCTAGAGTGTACGATGTTCACAA CGTGGTATTCAGTTTCCGATCACGTAAGCTCATCAATTCCGAGAGCGATCAGCAGCAGGTATTGCCGCTCGAATTAGATGAAGACGACGATGGCTTCTTA GTTGCAGAGAATCCGGGTTTTTCGCTTGATCATAACGATCAGAGAAGGCGGCACAGCAGTTTCACGAGGGAAGATGGAGAGGTAGTTATGGTGGGGAGGA AGAGCGTGGACATAATTCCATCTTCCTCTTTCTCATCAACTCCAAGGGGAGGGATTAAGAGACGGCCGCCGATCGTCGGAACAGTGCCGTTGCAGACGAA GGAGAAAGAGTACGTCCGGAGTTTAAGGCCGTCGGTTTGGTTAACGGAGCAATTCCCACTGAAGACGGAGGAGTTTCTGCCGTTGCTGGACATTTTAGCG AATAAAGTGAAGGCGGTGCGGAGGATGCGGGATTTGCTCACCACAAAGTTCCCGGCGGGAACATTTCCGGTGAAGGTGGCGATTCCGGTGGTGCCGACGG TGAGAGTGGTGATTACGTTCACCAAGTTTGTGGAGCTGAAACCATTGGACCAGTTCTATACTCCATTTTCAAGTCCGAGCAAGCCAGAGGATGAATCTCA AAACCAGAGTGCAGCATCCAGATTGTCGGCATCGTGGCTTCGACGGAGCGGTGGTAAGCAGCAGCCGGCGGCAACTCAGAGGACGGTGGAGGATCCATTC AGCATTCCCACTGGATATACATGGACCAGCAGCCGGTCACCTGTAGGAGGAGGAGGAGGAAATGGAGATGAAGATAAGTCTGTGAAAGTGAAGAAATCAA AGTCTGTAAGGAGATCCAAAGCAAGTAATTAA
AA sequence Show only first row Show all	>Lus10003524 pacid=23157282 polypeptide=Lus10003524 locus=Lus10003524.g ID=Lus10003524.BGIv1.0 annot-version=v1.0 MAPPPPSPPLLLSALRNMRDFYMEISFHFESSVIPFVGKIAPSDTYKIWKRDGNLRADTTLAGFDGLKIQRADQSFLFLGDGEQSHGIPSGSLLVLNHSE RKIHDAFETAGAPLSESDIAGFCSQTSVYRPGMDVTEAQLVGRTNWRRQEKFESVGEWKARVYDVHNVVFSFRSRKLINSESDQQQVLPLELDEDDDGFL VAENPGFSLDHNDQRRRHSSFTREDGEVVMVGRKSVDIIPSSSFSSTPRGGIKRRPPIVGTVPLQTKEKEYVRSLRPSVWLTEQFPLKTEEFLPLLDILA NKVKAVRRMRDLLTTKFPAGTFPVKVAIPVVPTVRVVITFTKFVELKPLDQFYTPFSSPSKPEDESQNQSAASRLSASWLRRSGGKQQPAATQRTVEDPF SIPTGYTWTSSRSPVGGGGGNGDEDKSVKVKKSKSVRRSKASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	0	1
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	1.0	0.9450
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	2.0	0.9195
AT2G19090			Protein of unknown function (D...		Lus10015534 [exp]	2.8	0.8964
AT3G27390			unknown protein		Lus10022317 [exp]	3.0	0.8806
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	3.9	0.9134
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	4.6	0.8860
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	6.7	0.8925
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	6.9	0.8706
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	8.0	0.8856
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	8.1	0.8879

Compare expression of checked genes

Lus10003524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.