Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 888 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT4G39350 875 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G09870 851 / 0 CESA5 cellulose synthase 5 (.1) AT2G21770 842 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G32410 647 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G17420 611 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 610 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 587 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G44030 473 / 3e-154 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT4G18780 464 / 1e-151 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003526 [exp] 1098 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1073 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1050 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1040 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002940 [exp] 733 / 0 AT5G64740 896 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10028597 [exp] 655 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 648 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 601 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 594 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087500 [exp] 961 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.007G076500 [exp] 950 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 889 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.005G194200 [exp] 881 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.013G019800 [exp] 734 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 702 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G029400 [exp] 650 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 647 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 643 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 639 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10003525 pacid=23157280 polypeptide=Lus10003525 locus=Lus10003525.g ID=Lus10003525.BGIv1.0 annot-version=v1.0 ATGAACACTGGGGGTCGCCTGATTGCTGGCTCTCACAACAGGAATGAGTTCGTCCTCATCAATGCTGATGAAAATGGCAGAATTAGATCCGTTCAAGAAT TGAGCGGGCAGGTGTGTCAAATTTGCGGAGATGAGATAGAGATTACCGTGGATGGGGAGCTGTTCGTTGCTTGCAATGAATGTGCTTTCCCTGTTTGTAG GCCTTGCTATGAGTACGAGAGACGAGAGGGGACTCAGGCTTGCCCTCAGTGCCGAACGAGATACAAACGTCTCAAAGGTTGTCCTAGGGTGGAAGGTGAT GAAGAGGAAGATGACATCGATGATCTGGAGCATGAGTTTGACTATGGTAATCTTGAAGGCTTAACCTCTGAACAAGTTGCAGAGCTGATGCTTGCTGCAC GTCTTAACACTGGCCGTGGATCGCAAGTTAATGGCTCTGGCTATCCCGGGTCGGATCTTGATTCATCTCCTCCTGGTGCTAAAGTTCCTCTCTTGACCTA TGGCGAGGAGGATGCTGACATTTCATCTGACCAGCACGCTCTTATTGTCCCTCCTCATGTGGGTCATGCCAACAGAGTTCATCCAATGCCTTACACTGAT CCATCTATACCTTTGCAACCGAGACCTATGGTTCCTCAGAAAGACATAGCAGTTTATGGTTATGGTAGTGTGGCGTGGAAAGACAGAATGGAAGAATGGA AGAGGAGGCAGAGTGACAAGCTTCAGGTGGTGAAGCATGAAGGTGTGAATGACGGTGGAAGCTTTGATGGGAACGAACTGGATGATCCTGATTTGCCAAT GATGGATGAAGGCAGGCAGCCACTTTCAAGGAAGTTGCCGATTCCTTCTAGTAAGATTAGTCCATATAGGCTGGTTATCGTTCTCCGTCTTGCAGTCGTA GCCTTGTTTTTCCACTATCGTATTCTCCACCCAGTCAAGGATGCATACCCCCTGTGGCTGACATCAGTTATTTGCGAGATATGGTTTGCTGTATCGTGGA TTCTTGATCAGTTCCCCAAATGGTGCCCTATAGTACGAGAGACGTATCTGGATCGACTGTCATTGAGGTATGAAAAAGAAGGAAAACCGTCGGAGCTAGC TAGTGTTGACGTCTTTGTCAGTACGGTGGATCCCATGAAAGAACCCCCATTAATCACGGCGAACACTGTTCTTTCAATTCTCGCGGTTGACTATCCTGTT GAAAAGGTTGCGTGCTATGTTTCTGATGATGGTGCCGCTATGCTGACATTTGAGGCACTCTCGGAGACGGCTGAATTTGCAAGGAAATGGGTTCCTTTCT GTAAAAAGTTTAATATCGAGCCTCGAGCTCCTGAATGGTACTTTTATCATAAGATGGACTACTTGAAGAACAAAGACCTTCCGTCATTTGTCCGAGAAAG GCGTGCAATGAAGAGAGACTACGAGGAGTTCAAGATTAGGATAAATGGTTTGGTCTCTACAGCACAAAAGGTTCCAGAAGATGGTTGGACCATGCAAGAC GGGACTCCATGGCCTGGCAACAGCGTGCGGGATCATCCTGGGATGATTCAGGTATTCCTTGGCCATAGTGGTGTTCGTGATGTTGAAGGGAACGAGTTGC CTCGTTTGGTTTATGTCTCTCGTGAAAAGAGACCTGGGTTTGACCATCATAAAAAGGCCGGGGCTATGAATGCACTGCGATGGCGGGGGAGGATCGCCGT CGACGCCATGGGTGAGGAAATGGCGGCGAAGAGAAAGGGTCCCGTGGTCAGCCAGAGCCACGACCTCCTCATTAAGAAGCTCCTCGCTTCGATCAACTTC ACTCCCGATCATCCCGTTTACCCCGTCATGGTTGAGGAGACGATTTCCAGCTTGAACGGCGGGAAGGGATGCAGTAAGGATGAAATTTCCGATTTTATAT CCACCAAGTACACGGTTTCCCCTGTTGTGCATTCAGCTAGGTTACCTTTAGAGTTAGACAAGTGTGTTAGTGATGAGGTGATAGTGGTCACTTCAGGTAA TCTGTATACTGCTCGAGCTGTAAATGCTGATGGGGGGATGCTGGTTCTAGTGGTGGGGAACTAA
AA sequence Show only first row Show all	>Lus10003525 pacid=23157280 polypeptide=Lus10003525 locus=Lus10003525.g ID=Lus10003525.BGIv1.0 annot-version=v1.0 MNTGGRLIAGSHNRNEFVLINADENGRIRSVQELSGQVCQICGDEIEITVDGELFVACNECAFPVCRPCYEYERREGTQACPQCRTRYKRLKGCPRVEGD EEEDDIDDLEHEFDYGNLEGLTSEQVAELMLAARLNTGRGSQVNGSGYPGSDLDSSPPGAKVPLLTYGEEDADISSDQHALIVPPHVGHANRVHPMPYTD PSIPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKRRQSDKLQVVKHEGVNDGGSFDGNELDDPDLPMMDEGRQPLSRKLPIPSSKISPYRLVIVLRLAVV ALFFHYRILHPVKDAYPLWLTSVICEIWFAVSWILDQFPKWCPIVRETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPV EKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKFNIEPRAPEWYFYHKMDYLKNKDLPSFVRERRAMKRDYEEFKIRINGLVSTAQKVPEDGWTMQD GTPWPGNSVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNALRWRGRIAVDAMGEEMAAKRKGPVVSQSHDLLIKKLLASINF TPDHPVYPVMVEETISSLNGGKGCSKDEISDFISTKYTVSPVVHSARLPLELDKCVSDEVIVVTSGNLYTARAVNADGGMLVLVVGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	1.0	0.9542
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	2.0	0.9313
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	4.0	0.8894
AT3G01810			unknown protein		Lus10022341 [exp]	6.0	0.8886
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	6.9	0.9006
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	7.7	0.9271
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	7.7	0.9275
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	10.2	0.8916
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	11.0	0.8764
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	12.1	0.9017

Compare expression of checked genes

Lus10003525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.