Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08780 54 / 2e-08 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002941 [exp] 233 / 6e-72 AT5G08780 51 / 2e-06 winged-helix DNA-binding transcription factor family protein (.1) Lus10003525 [exp] 202 / 2e-60 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10000368 [exp] 42 / 0.0002 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10002934 [exp] 0 / 1 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069700 [exp] 93 / 2e-21 AT5G08780 83 / 3e-16 winged-helix DNA-binding transcription factor family protein (.1) Potri.017G129400 [exp] 47 / 3e-06 AT1G14900 102 / 2e-27 high mobility group A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10003527 pacid=23157278 polypeptide=Lus10003527 locus=Lus10003527.g ID=Lus10003527.BGIv1.0 annot-version=v1.0 ATGTCCACCGATTTCGTCCGTTGCTTCTCCTCCCTCTTCACCGCCACAATGCATTCGCCGGAGCCGGAGCCGCAGCCATGGACGTCCAAGATCGACGTCG ACGCCATGGTTGAGGAAATGGCGGCGAAGAGAAAGGGTCCCGTGGTCAGCCAGAGCCACGACCTCCTCATTAAGAAGCTCCTCGCTTCGATCAACTTCAC TCCCGATCATCCCGTTTACCCCGTCATGGTTGAGGAGACGATTTCCAGCTTGAACGGCGGGAAGGGATGCAGTAAGGATGAAATTTCCGATTTTATATCC ACCAAGTACACGGTTTCCCCTGTTGTGCATTCAGCTAGGTTACCTTTAGAGTTAGACAAGTGTGTTAGGGATGAGGTGATAGTGGTCACTTCAGCAAAAC TACTGGACAAGGCTACAGGAGAGAATCGGAGAGGAAGTTTGAGCAAAGAAGAAAAGAGGGAAGCAATAGATAGAGCAAGAAGTGCTTTCACCTCCAAAAA TCCCTCCTTTATGTTGGCTGTACAACCTTCGTACCTTAATCCTCTTCCCAACGTGGAGCACTTGAAGGATGGGAATGGAAAAGCAATCCTTGTGAGGGTT AGTGATGGGAGAAAGAGGAAGGTGAATTGCACTGTTTCTTGTGATCCTGCAGGTCCGGCTGGCTTAGAGGATGAAAGCATGGTTTGGTGGCTCAGTCTGG AAAGACTTTGCGGTAGGAAATCTGCTATCAGTTGGTGA
AA sequence Show only first row Show all	>Lus10003527 pacid=23157278 polypeptide=Lus10003527 locus=Lus10003527.g ID=Lus10003527.BGIv1.0 annot-version=v1.0 MSTDFVRCFSSLFTATMHSPEPEPQPWTSKIDVDAMVEEMAAKRKGPVVSQSHDLLIKKLLASINFTPDHPVYPVMVEETISSLNGGKGCSKDEISDFIS TKYTVSPVVHSARLPLELDKCVRDEVIVVTSAKLLDKATGENRRGSLSKEEKREAIDRARSAFTSKNPSFMLAVQPSYLNPLPNVEHLKDGNGKAILVRV SDGRKRKVNCTVSCDPAGPAGLEDESMVWWLSLERLCGRKSAISW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08780			winged-helix DNA-binding trans...		Lus10003527 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	17.1	0.8488
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	30.1	0.8242
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	32.0	0.7999
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	53.5	0.8074
AT1G67040			unknown protein		Lus10017607 [exp]	79.3	0.8003
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10024796 [exp]	85.9	0.7953
					Lus10021271 [exp]	89.3	0.7791
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	98.9	0.7810
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	116.1	0.7913
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	133.2	0.7642

Compare expression of checked genes

Lus10003527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.