Plant FIBer expression Database

Lus10003528 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64500 466 / 3e-161 Major facilitator superfamily protein (.1)
AT2G22730 458 / 5e-158 Major facilitator superfamily protein (.1)
AT5G65687 432 / 4e-148 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019244
[exp]
467 / 3e-161 AT2G22730 638 / 0.0 Major facilitator superfamily protein (.1)
Lus10011580
[exp]
446 / 3e-146 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1)
Lus10002935
[exp]
385 / 2e-129 AT5G64500 340 / 7e-112 Major facilitator superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G081100
[exp]
537 / 0 AT5G64500 617 / 0.0 Major facilitator superfamily protein (.1)
Potri.001G286600
[exp]
506 / 8e-177 AT5G64500 548 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Lus10003528 pacid=23157283 polypeptide=Lus10003528 locus=Lus10003528.g ID=Lus10003528.BGIv1.0 annot-version=v1.0
ATGGCGGAAGAAAAGACAGAGGAAGTGAAGACGGAGAACCGGGAAACAAACCCGTCTGAGAATATGGCGGATAATTCAGCTTCGTCTCTGTCGGAACAAT
CAGCAACTGTTTCTCAGCCATCGTGGTTCACTCCCAAAAGATTATTGGTAATCTTTTGTGTGGTCAACTTGATAAATTATATGGAGAGAGGAGCCATGGC
AAGTAATGGTGTCAATGGGAGCCCTAAAGTTTGCACGGCAAATAGCACGTGCACTGCTGGCTCTGGGATACAGGGGGAGTTTAACCTGAGTAATTTTGAA
GATGGAGCCTTATCTTCTGCTTTTGTGGTTGGACTGCTTATTGGTTGTCCAATATTTGCATCACTAGCAAAGAGCTATAACCCCTTTAGGCTCATTGGAT
TTGGATTATCAGTTTGGATGCTTGCTGTGATTGGTTGTGGGCTGTCTTTCAGTTTCTGGTTCATTGCAATCTGTCGTATGGTAGTGGGAATTGGTGAAGC
TTCTTTCGTGAGCCTTGCTGCTCCTTTTATTGATGATAATGCCCCTGCCAAACAGAGGACTGCATGGCTAGGAATATTCTATATGTGTATATCAACTGGC
TATGCTGTTGGGTATGTATATGGTGGACTGGTTGGTGATCACCTAAAGTGGCGCTATGCATTCTGGGGAGTGGCGATTTTGATGTTTCCATTTATAGTTT
TGGGTTGGGTTATGAAGCCTTTGCAATTGAAAGGTTTTACACACTCTGAGCCAAACAAAGCGGTCACTTCAGTGACAACTGCATCAGAAGTGCAAGGTTT
GGAAGTTTCAACTGGCAAAGTTGGCACGTTGGCTGCAGAACAGCTTGATCAGAAAGTCCCTAAGAGTTCTTCCAATTCGGGATCAGAGTCACGTAAAATA
AATCAGTTCTCAAGATTCCTAAAAGATATGAAAGAGCTTTTGAAGTCAAAGACATTCATCGTCAGTGTTCTAGGGTACACTGCTTACAATTTCGTCATTG
GTGCATACTCTTACTGGGGTCCTAAAGCTGGTTACAATATATATAAGATGCAAAATGCTGACTTGATTTTCGGAGGGGTTACGATAGTATGTGGTATATT
AGGCACTCTTGCTGGAGGCTTTCTTCTAGATTATCTGACCAGCACTATCCGCAATGCCTTTAAGCTTCTTACTGGTGCTGTGTTAGCCGGGGCCATCTTT
TGCTTCAGTGCTTTCTGCTTTAAGAACATGTATGGTTTCCTTGCCTTCTTCGCAATTGGTGAAGTGCTTGTATTTGCTACTCAGTTTAAGACCATTGTCG
ATGGCTATGTCAACAGTCGCGATTCACCTTTTTGGAGACGTGCCTTCCTCTCCACTCGTTGGTCTCCTCCAGGAGTTTTCATGAAAAGTGTTGATAGATT
CGATGAAGAAGAACCACCACAGAAATCAGCTGCCTCAGATACAACAGATGGAGCTGTGCCTCAGGAGAAGACAGACCCTTGA
AA sequence
>Lus10003528 pacid=23157283 polypeptide=Lus10003528 locus=Lus10003528.g ID=Lus10003528.BGIv1.0 annot-version=v1.0
MAEEKTEEVKTENRETNPSENMADNSASSLSEQSATVSQPSWFTPKRLLVIFCVVNLINYMERGAMASNGVNGSPKVCTANSTCTAGSGIQGEFNLSNFE
DGALSSAFVVGLLIGCPIFASLAKSYNPFRLIGFGLSVWMLAVIGCGLSFSFWFIAICRMVVGIGEASFVSLAAPFIDDNAPAKQRTAWLGIFYMCISTG
YAVGYVYGGLVGDHLKWRYAFWGVAILMFPFIVLGWVMKPLQLKGFTHSEPNKAVTSVTTASEVQGLEVSTGKVGTLAAEQLDQKVPKSSSNSGSESRKI
NQFSRFLKDMKELLKSKTFIVSVLGYTAYNFVIGAYSYWGPKAGYNIYKMQNADLIFGGVTIVCGILGTLAGGFLLDYLTSTIRNAFKLLTGAVLAGAIF
CFSAFCFKNMYGFLAFFAIGEVLVFATQFKTIVDGYVNSRDSPFWRRAFLSTRWSPPGVFMKSVDRFDEEEPPQKSAASDTTDGAVPQEKTDP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G22730 Major facilitator superfamily ... Lus10003528
[exp]
0 1
AT5G65210 bZIP TGA1 bZIP transcription factor fami... Lus10037550
[exp]
2.0 0.9525
AT4G28260 unknown protein Lus10018587
[exp]
2.4 0.9355
AT1G18270 ketose-bisphosphate aldolase c... Lus10002140
[exp]
3.5 0.9516
AT2G28080 UDP-Glycosyltransferase superf... Lus10021439
[exp]
5.2 0.9244
AT1G48790 AMSH1 associated molecule with the S... Lus10009006
[exp]
8.0 0.9339
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10003395
[exp]
9.2 0.9116
AT3G47800 Galactose mutarotase-like supe... Lus10023611
[exp]
9.7 0.9335
AT1G52790 2-oxoglutarate (2OG) and Fe(II... Lus10041281
[exp]
11.4 0.8700
AT4G29800 PLP8, PLAIVD ,P... PATATIN-like protein 8 (.1.2) Lus10023512
[exp]
13.5 0.9105
AT1G23870 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10012990
[exp]
13.9 0.9253

Lus10003528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.