Plant FIBer expression Database

Lus10003529 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12790 287 / 4e-98 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G377100
[exp]
347 / 1e-121 AT1G12790 330 / 4e-115 unknown protein
PFAM info
Representative CDS sequence
>Lus10003529 pacid=23157268 polypeptide=Lus10003529 locus=Lus10003529.g ID=Lus10003529.BGIv1.0 annot-version=v1.0
ATGGCGAATCCGAGTTCGAATTCAGGGAGTTCAGGAGGAGGAATTTCTGGAATATGTATGATGAGCACTATATGGAGAGATGAGCAACATCCTTCTTTCA
TCGATTTCGCCTCTTCTTTCCTTCGCGCGAATTCCTTCCGTCTTAACGTCGTTCCGATTGCTCCGGATTGCATTTTTAACTGTGGAGGTATTTCGGTGGC
ATTCATATTTGTAACTTACTGGGATTGCAGCAACCCCATGCCTGTCTTCAACAGAGTTCAGAAGCTGAAGGCACAATTTGCAAACTTATACGTGGTTGTC
TGCCTTCCAACAAAGGATATAAATGATTCATTTGTTCGCTCTTACTTCAAATCTGGGATGGAGATAGGCCGGCCATTATTTATGCCAGTTCAAGACTTGG
AGATGGGGTTTGAGAAGATGGTTAAGATAGCACATACCCGGGGTGCATGCAAGCGGCAGGATGTTACTTCAACTATGAAGGCTGAGGTCTGTATGGAGGA
GAATCTGTTGCACTCTCCTATGATTGGAATTGCTGTCATTTTACTTGTGCAAGCGATGGACAATTTCCTCAAAGTGATCACCTCAATACCAGGCATTAAC
AACCATGATGCAAATTCGCTGAATCAAGCTATAGGTTCAATTGAAGCCATTGCGAAAGCGTCGAAAGAAAGCATCCTGGAGAACACCGACCTTTCCCCTG
AAAAGGCTGAGATCATCACTAGGTTTTTCAGGGATCCTAAGTTTTACCTCAGTCCAAGATTTACCAAGTAG
AA sequence
>Lus10003529 pacid=23157268 polypeptide=Lus10003529 locus=Lus10003529.g ID=Lus10003529.BGIv1.0 annot-version=v1.0
MANPSSNSGSSGGGISGICMMSTIWRDEQHPSFIDFASSFLRANSFRLNVVPIAPDCIFNCGGISVAFIFVTYWDCSNPMPVFNRVQKLKAQFANLYVVV
CLPTKDINDSFVRSYFKSGMEIGRPLFMPVQDLEMGFEKMVKIAHTRGACKRQDVTSTMKAEVCMEENLLHSPMIGIAVILLVQAMDNFLKVITSIPGIN
NHDANSLNQAIGSIEAIAKASKESILENTDLSPEKAEIITRFFRDPKFYLSPRFTK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G12790 unknown protein Lus10003529
[exp]
0 1
AT1G74240 Mitochondrial substrate carrie... Lus10017849
[exp]
1.0 0.8225
AT3G63480 ATP binding microtubule motor ... Lus10029983
[exp]
5.3 0.7775
AT3G48810 Pentatricopeptide repeat (PPR)... Lus10011676
[exp]
6.6 0.6938
AT1G25580 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION ... Lus10021708
[exp]
8.5 0.7688
AT4G37810 unknown protein Lus10011570
[exp]
11.2 0.7586
AT4G11410 NAD(P)-binding Rossmann-fold s... Lus10028781
[exp]
11.2 0.7388
AT1G50660 unknown protein Lus10043111
[exp]
17.4 0.7636
AT3G22880 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTIO... Lus10006625
[exp]
23.5 0.7249
AT3G51060 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENC... Lus10041803
[exp]
25.8 0.7397
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Lus10031078
[exp]
30.7 0.7493

Lus10003529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.