Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 89 / 3e-22 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G17152 79 / 9e-19 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17130 60 / 1e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17150 57 / 2e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17140 55 / 5e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G64620 51 / 3e-08 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT5G46930 44 / 9e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G49330 44 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46980 42 / 8e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46970 41 / 8e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002933 [exp] 320 / 2e-113 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 91 / 4e-23 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 83 / 3e-20 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 79 / 2e-18 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 78 / 3e-18 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037791 [exp] 77 / 1e-17 AT3G17130 131 / 8e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10017013 [exp] 72 / 4e-16 AT1G47960 112 / 4e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017074 [exp] 71 / 3e-15 AT3G17130 121 / 8e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10016319 [exp] 69 / 2e-14 AT3G17130 151 / 8e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083500 [exp] 176 / 7e-57 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G063000 [exp] 121 / 5e-35 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.001G288500 [exp] 83 / 8e-21 AT1G47960 59 / 1e-11 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.008G102600 [exp] 79 / 7e-19 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G209800 [exp] 61 / 5e-12 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G127500 [exp] 58 / 7e-11 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.007G108301 [exp] 57 / 4e-10 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G122000 [exp] 56 / 9e-10 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.004G016500 [exp] 53 / 6e-09 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.007G068300 [exp] 53 / 8e-09 AT4G00872 113 / 4e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10003530 pacid=23157271 polypeptide=Lus10003530 locus=Lus10003530.g ID=Lus10003530.BGIv1.0 annot-version=v1.0 ATGTTGAGGAAGGTAATCATAGTCATGGTACTCACAATTTACCATGTGGTAGCCACAAGACCAATCCCAAACATCCTAGGAAACAACCTCATCGACAAAG TCTGCAAACGATCACCATACTACGAGCTATGCATCCAAACCTTGGTTTCGAATCCGGAGAGCTTCCGCAGCAATGTGGAAGGCCTAGCCAAGATCACAGT GGGGGCAATTGCAGACAAGGCAACCACTGCCCTCCACAGGATAGAAAAGATATTGGAAAAGAGGGAGTTGAAGCCAAGTGTAAGGGATGCATTAGATGGA TGTGCTGAGAGGTACCACGCTGTGATTGAGCAAGATATTCCGGAGACACTTAGATCACTGACAACTGGAAACTACAAGTTTGCAGCAAGAGGGACTAATG ATGCTGCCCAGGAGGCCATGTCATGTGAGGAGGATTTCGCGACAGGGGAGTCACCATTGTCGGATTTGAACATGGTGGTTCATGACATATCTGTTGTGGC TGCTGCCGTTGTTCAGGCCGTTATTGAGAGTTGA
AA sequence Show only first row Show all	>Lus10003530 pacid=23157271 polypeptide=Lus10003530 locus=Lus10003530.g ID=Lus10003530.BGIv1.0 annot-version=v1.0 MLRKVIIVMVLTIYHVVATRPIPNILGNNLIDKVCKRSPYYELCIQTLVSNPESFRSNVEGLAKITVGAIADKATTALHRIEKILEKRELKPSVRDALDG CAERYHAVIEQDIPETLRSLTTGNYKFAARGTNDAAQEAMSCEEDFATGESPLSDLNMVVHDISVVAAAVVQAVIES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	0	1
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10011633 [exp]	1.0	0.9784
AT5G67090			Subtilisin-like serine endopep...		Lus10009365 [exp]	1.7	0.9517
					Lus10035523 [exp]	2.0	0.9590
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10005809 [exp]	9.4	0.9443
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	12.0	0.9517
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	13.8	0.9470
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	14.4	0.9432
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	15.9	0.9405
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	17.8	0.9458
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	17.9	0.9457

Compare expression of checked genes

Lus10003530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.