Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13530 170 / 7e-49 unknown protein AT3G07820 139 / 2e-36 Pectin lyase-like superfamily protein (.1) AT4G10080 137 / 5e-36 unknown protein AT3G14040 137 / 3e-35 Pectin lyase-like superfamily protein (.1) AT3G07840 136 / 4e-35 Pectin lyase-like superfamily protein (.1) AT3G07850 137 / 6e-35 Pectin lyase-like superfamily protein (.1) AT5G48140 132 / 6e-34 Pectin lyase-like superfamily protein (.1) AT3G07830 132 / 9e-34 Pectin lyase-like superfamily protein (.1) AT4G35670 125 / 2e-31 Pectin lyase-like superfamily protein (.1) AT2G43860 122 / 3e-30 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002932 [exp] 484 / 9e-171 AT4G13530 176 / 7e-54 unknown protein Lus10002931 [exp] 453 / 1e-156 AT3G07820 233 / 6e-73 Pectin lyase-like superfamily protein (.1) Lus10030342 [exp] 278 / 2e-89 AT4G13530 176 / 1e-53 unknown protein Lus10041074 [exp] 258 / 7e-82 AT4G13530 170 / 2e-50 unknown protein Lus10039154 [exp] 157 / 1e-42 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 154 / 6e-42 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 153 / 4e-41 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 153 / 4e-41 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 157 / 7e-41 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071300 [exp] 254 / 6e-80 AT4G10080 125 / 3e-33 unknown protein Potri.013G099200 [exp] 167 / 1e-46 AT4G13530 116 / 3e-30 unknown protein Potri.019G066800 [exp] 167 / 2e-46 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 167 / 2e-46 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 167 / 2e-46 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 166 / 8e-46 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 166 / 8e-46 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 166 / 8e-46 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 163 / 5e-45 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 143 / 9e-38 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10003531 pacid=23157261 polypeptide=Lus10003531 locus=Lus10003531.g ID=Lus10003531.BGIv1.0 annot-version=v1.0 ATGGGAATGGTGGGTCTGGAAGGGCCATGCAAAAGTGATGAGATTCATGTGCAAATCGATGGCTACATAAGAACACCACCAACTGGTTTAAGAGGCCTAA GCTGGATTACCTTTTCAAGCCTTGGAAATCTAACAGTATATGGGAATGGCACTCTCGACGGTCAAGGACCTCTCGCTTCTAAAGCATCCAATAATCGCAA GAACATGCCTCACCTCCCACTCGCCACCAATCTCAGATTTGAGTCCATCACCAACGCTATCATACAAGGCCTTACTTCTAAAGACAGCCGTAATTTCCAC ATCGACGTTTCCCGTTCCATGAACGTCACCTTGAGACGCCTTACCGTCACCGCACCCCTCGACAGCAACACCACCGTCGGGATATTCCTCCGCCGATCCC ACCTAGTCACCATCTCCGATGCCACCATCCAAACTGGTCACTACTGCATCCACCTCTCTGATGGGTCCCAGGAGGTCAATATTCACAACATGACATGTGG GCCTGGCGGAGGAGGCGGCGTCCTCTTAGGAACCTTGGGAAGGTCTCCGGACGAGGAAAAGGTGTTTGACGTGGCAGTCGGGAACAGTAGCTTCATCTCC ACGGCAAACGGCCTCAGGATTGAAGCTGTGCCAGGAACCATTAACGTGGCCTCCAATATTAGCTTTGATGATATAACTATGGACAAGGTCAACAATCCTA TTACCATTGATCAGCATTTTTGTCAAGACAAATCTTGTGACAAGGAGATAAGATATTTACTTATGGATTCACTGGAGTTTCAAGACTGGGAGGTGCTGAC TCATCCCGACTTGGATGCTGTTAGCTCCCTTGTCTTGACGGATAATCCGAGGCACTTGGAAGAAATTGAGGCTGATTCCAGCGGGATGATCAGGTTGGAT TACTTCTCTCTCGCAAATGATAGCATGTCTGGTAAGGTGGCTGTTACTGCTACTAGTGATGTAGAAAGTTCTGTTGGTTCTAATAATCCCAGCTGGATTG ATCCAGCCACTGATGTTCGGTATGAGAGTAAGAATCATTGTGGATTTTGGTCTGATTTGGGCAGTGATCGCTCCGATGGACGTAAAGCTAGTGACTTGGG TCTGAAAAGTGATCAATTTACGGGAGCTGACGAAACTGAAGCCAAAGACGTTGCCTTTGATCGTGTGAAGGATGAGTTTTCCAGTTGCCAGAGGAAAACT GATCAGGTGGCGGGTTTCCAAGAGAATAAGACCAACTACTGCTCTGATGAGGTTGTAAGTGGAAATGATTCGGAAGAGGATAACTCTAGTGTCGATGAGG CTGCTGTGGAGGAGGTGAAGAAGCAAGTTGTGTGGTGGAAAGTGCCTCTTGAATTGTTGAAATTTTGTGTCTTCAGAGTTAGTCCTGTGTGGACTTTCTC AATGGCTGCAGCTGTGATGGGATTTCTTGTCTTGGGTCGGAGGTTATATAACATGAAGCGCAAGGCAAAGACCCTGCAGCTTAAAGTTACCGTCGACGAT AAGAAGGTGTCCCAGTTCATGAGCCGTGCTGCACGGCTGAATGAAGCATTTTCGGTGGCGAGACGGATTCCTATAGTGCGGCCTATGCTACCACCTGCTG GAGTTAACTCATGGCCTGTGATGAACATGAGATGGTAG
AA sequence Show only first row Show all	>Lus10003531 pacid=23157261 polypeptide=Lus10003531 locus=Lus10003531.g ID=Lus10003531.BGIv1.0 annot-version=v1.0 MGMVGLEGPCKSDEIHVQIDGYIRTPPTGLRGLSWITFSSLGNLTVYGNGTLDGQGPLASKASNNRKNMPHLPLATNLRFESITNAIIQGLTSKDSRNFH IDVSRSMNVTLRRLTVTAPLDSNTTVGIFLRRSHLVTISDATIQTGHYCIHLSDGSQEVNIHNMTCGPGGGGGVLLGTLGRSPDEEKVFDVAVGNSSFIS TANGLRIEAVPGTINVASNISFDDITMDKVNNPITIDQHFCQDKSCDKEIRYLLMDSLEFQDWEVLTHPDLDAVSSLVLTDNPRHLEEIEADSSGMIRLD YFSLANDSMSGKVAVTATSDVESSVGSNNPSWIDPATDVRYESKNHCGFWSDLGSDRSDGRKASDLGLKSDQFTGADETEAKDVAFDRVKDEFSSCQRKT DQVAGFQENKTNYCSDEVVSGNDSEEDNSSVDEAAVEEVKKQVVWWKVPLELLKFCVFRVSPVWTFSMAAAVMGFLVLGRRLYNMKRKAKTLQLKVTVDD KKVSQFMSRAARLNEAFSVARRIPIVRPMLPPAGVNSWPVMNMRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13530			unknown protein		Lus10003531 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10033779 [exp]	1.4	0.8788
AT1G16916			unknown protein		Lus10032325 [exp]	1.4	0.8700
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	3.5	0.8668
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	6.5	0.8637
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	8.9	0.8518
AT2G37480			unknown protein		Lus10024420 [exp]	9.5	0.8656
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10029651 [exp]	10.6	0.8352
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	10.6	0.8546
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	11.7	0.8653
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	13.7	0.8473

Compare expression of checked genes

Lus10003531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.