Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22882 384 / 1e-126 Galactose-binding protein (.1) AT1G71360 375 / 1e-123 Galactose-binding protein (.1) AT4G23950 255 / 4e-78 Galactose-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002929 [exp] 928 / 0 AT1G71360 476 / 1e-159 Galactose-binding protein (.1) Lus10032405 [exp] 297 / 5e-93 AT4G23950 446 / 5e-150 Galactose-binding protein (.1.2) Lus10023065 [exp] 290 / 3e-90 AT4G23950 427 / 9e-143 Galactose-binding protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068900 [exp] 569 / 0 AT1G71360 484 / 3e-165 Galactose-binding protein (.1) Potri.003G141500 [exp] 322 / 8e-103 AT4G23950 411 / 4e-137 Galactose-binding protein (.1.2) Potri.001G089700 [exp] 320 / 1e-102 AT4G23950 399 / 3e-132 Galactose-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10003532 pacid=23157281 polypeptide=Lus10003532 locus=Lus10003532.g ID=Lus10003532.BGIv1.0 annot-version=v1.0 ATGCAGAGATCACGAAGGGCTTTTCTGCAAAGAAGAGCTTCCGAGAAGGATATCAGTGGAATAAGGAACCGGTTATACAAGATTTCCTTGTCTCTGGTTC TTCTTTTGTGGGGGTTTCTTTTTCTATCCAGTTTGTGGATCAGCCAGGGTGATGGCTATAGAGATGGACTTGCAGTAAATTCACAGGATGTGGGTGTGTC TACTTGGACAGCAGAGAAGCTGGAAAATGGGGAAAACTCAGATTCAGTACATAAAAGACGTGTTGAAGAGTTTGGTAGCCATTCCGATGAGACTTTGTGT GTAGATGTACCTATAAAGAAAGGTCCAAATGAGGATTCCTTTGTTGATGAGGGGAACAACAACGATGGATTCAGTCTGCAGCATCTGGAGGCAACCATTG GAGGGAGATCTGAAGATACTAGTCCAAAGAATGATCGACCGTCTCGCGTTGTACCCCTTGGCCTTGATGAATTCAAAAGCAAAGCATTCAGCTCTAAAAC TAAGGGTGGAACTGGTCCAGCAGGAAGTGTAGTACACAGAATGGAGCCTGGTGGGAAAGAGTACAACTATGCTTCATCTTCAAAGGGCTCAAAAGTCTTG GCCTTTAACAAGGAGGCAAAAGGAGCATGTAATATCTTAATAAGAGATAAGGACAAGTACCTCCGTAATCCATGTTCCGCAGAAGAGAAGTACGTTATAA TTGAACTTTCAGAAGAGACGTTGGTAGATACTATAGAAATCGCAAATTTTGAGCACTACTCATCTAATGTAAAGGATTTTGAGCTGCTGGGTAGCTTGGT TTATCCAACTGCACACTGGGTGAAACTGGGGAATTTTACAACGGCGAATGTGAAGCAGGTTCGGAGGTTTGTGCTTTCAGAACCAAAATGGGTAAGATAT ATGAGGTTGAATCTGCTAAGTCATTATGGGTCCGAGTTCTATTGCACACTAAGCCTTTTTGAGGTCTACGGAGTTGATGCTGTTGAGAAAATGCTGGAAG ATCTGGTATCTGTTCAAGACAAAGTTTTTGTGCCAGAGGAGGAGCAGAAACCGTTTGCGTCCCAGTTGGGACACTCGGAGGGGGATGGTGATCAGCTGGA CTCGTTCAAAGAAATTGAATCTGAGCTGTCAGTTGAAAATCCTAATTTGAAAAGTGAGGTCCGGCGAAATGAAATGGCTGAACCTGTTGAAGAATTTCCT TATCATCACAGCGGGAGGTCTAGTGGTGACAGCGCTCTAAAAGTGTTGATGCAGAAAGCCCGTTCACTTGACCTAAGTCTTTCCCTTTTAGAACGGTATG TAGAGGAAGTTAATTCCAGACATGGGAGTATTTTCAAAGACTTGGACAAGGATATAGCAGATAATACTTTGCTTTTAGAAAAGATCAGATTGGACATGAA GAACCTCCATGCCAGCCAGAAACTTATCGCAGAAGAACTCAATGATCTTATTTCTTGGAGGTCCCTTGTTTCGAGAAAAATGGATGATATCCTCAGGGAC AACCTTGATCTCAGCACTGCTGTAATCTCGTACTGGTTTTCGAACTCATACCAGTTAAAAAATGTGCATGGCTGA
AA sequence Show only first row Show all	>Lus10003532 pacid=23157281 polypeptide=Lus10003532 locus=Lus10003532.g ID=Lus10003532.BGIv1.0 annot-version=v1.0 MQRSRRAFLQRRASEKDISGIRNRLYKISLSLVLLLWGFLFLSSLWISQGDGYRDGLAVNSQDVGVSTWTAEKLENGENSDSVHKRRVEEFGSHSDETLC VDVPIKKGPNEDSFVDEGNNNDGFSLQHLEATIGGRSEDTSPKNDRPSRVVPLGLDEFKSKAFSSKTKGGTGPAGSVVHRMEPGGKEYNYASSSKGSKVL AFNKEAKGACNILIRDKDKYLRNPCSAEEKYVIIELSEETLVDTIEIANFEHYSSNVKDFELLGSLVYPTAHWVKLGNFTTANVKQVRRFVLSEPKWVRY MRLNLLSHYGSEFYCTLSLFEVYGVDAVEKMLEDLVSVQDKVFVPEEEQKPFASQLGHSEGDGDQLDSFKEIESELSVENPNLKSEVRRNEMAEPVEEFP YHHSGRSSGDSALKVLMQKARSLDLSLSLLERYVEEVNSRHGSIFKDLDKDIADNTLLLEKIRLDMKNLHASQKLIAEELNDLISWRSLVSRKMDDILRD NLDLSTAVISYWFSNSYQLKNVHG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71360			Galactose-binding protein (.1)		Lus10003532 [exp]	0	1
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	7.7	0.7320
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	14.6	0.7367
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	15.5	0.7367
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	18.1	0.6998
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	23.5	0.6565
AT2G17550			unknown protein		Lus10016693 [exp]	27.9	0.6883
AT2G40820			unknown protein		Lus10027293 [exp]	28.7	0.7052
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	29.9	0.6641
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	32.9	0.6200
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	37.1	0.7005

Compare expression of checked genes

Lus10003532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.