Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24550 785 / 0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G60780 238 / 2e-73 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 235 / 4e-72 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 223 / 2e-67 Clathrin adaptor complexes medium subunit family protein (.1.2) AT1G56590 130 / 2e-33 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024548 [exp] 886 / 0 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10004626 [exp] 242 / 7e-75 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 234 / 6e-72 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 234 / 9e-72 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10030961 [exp] 226 / 9e-69 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10040086 [exp] 226 / 2e-68 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10018088 [exp] 205 / 7e-58 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 164 / 3e-46 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10031432 [exp] 131 / 2e-33 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105100 [exp] 809 / 0 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.002G105050 [exp] 302 / 6e-102 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.008G187600 [exp] 246 / 2e-76 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.010G044700 [exp] 238 / 2e-73 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 221 / 9e-67 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 219 / 4e-66 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.013G006400 [exp] 131 / 2e-33 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.005G010600 [exp] 128 / 2e-32 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10003537 pacid=23165738 polypeptide=Lus10003537 locus=Lus10003537.g ID=Lus10003537.BGIv1.0 annot-version=v1.0 ATGATCTCGCAGTTCTTCGTCCTCTCGCAGCGTGGCGATAATATCGTCTTCCGCGACTATCGCGGAGATGTGCAGAAGGGGAGTGCGGAAATATTTTTCA GGAAAGTCAAGTTCTGGAAAGATGATGGTGAAGCAGAAGCGCCACCTGTCTTTGTAGGCTGTTTGTACAACTCAAAATTTGTTCATCCTTTCATCCTCTA CTTGCACTTACATCTGCCCGTGTACCTTCTTATTTCTTCTATTGGTTTAATTCAACAGAATGTCGATGGTGTAAACTACTTTCATGTGAAAGTTGTTGGA CTCTTATTCGTCGCAACAACTAGAGTCAATATGTCACCTTCACTAGTTTTGGAACTTCTACAACGGATAGCTCGTGTCATCAAAGATTACCTCGGGATTC TCAATGAAGATTCGTTCCGAAAAAACTTTGTGCTCGTCTATGAGTTGCTTGATGAAGTCATTGATTTTGGTTATCTACAAACGACTTCCACAGAAGTTTT GAAGTCGTACGTCTTTAATGAACCTATAGTGATCGATGCTGTCCGTTTGCAACCTCCCAATCCTGCTTCCATTTTCATGCAAGGGACCAAACGCATGCCA GGTACAGCTGTGACAAAATCAGTGGTAGCAAATGAGCCTGGCGGTAGGAAGAGGGAAGAAATCTTTGTGGACATAATTGAGAAAATTAGTGTGACGTTCA GCTCCAGTGGGTATATCCTGACCTCTGAAATTGATGGAACAATTCAAATGAAGAGCTATCTTAGTGGTAATCCAGAAATCCGTTTAGCTCTCAACGAGGA CCTGACAGTTGGAACCAATGGAGGGAGATCAAACTACGATAATCGAAGTTCATCAGGGTCAGGATCAGTGATTCTAGATGACTGTAATTTCCATGAATCT GTGCGTCTTGAGAGCTTTGATTTAGACAGAACTTTGTCTCTGGTGCCACCAGACGGTGAATTCCCTGTAATGAATTATCGCATGACACAGGAATTCAAAC CTCCCTTCCGCATTAATACTTTGATTGAAGAGGCACGAAGTCTTAGGGCTGAAGTGATTCTCAAGTTCTCTGCCGAGTTTCCTTCAAATATTACTGCAAA CACAATTATTGTACAAATGCCACTGCCAAAATATACTGCCAGAGCAACGTTTGAGTTGGAACCTGGTGCAGTTGGGCAGACAACTGATTTCAAGGAATCG ACTAAGAAGCTTGAATGGGGACTAAAGAAGGCAAGATCATTCTTGGGTGTTTCAGGTGGATCTGAACACACATTACGAGCAAAGCTGACATTTTCTCAGC AGTTGCATGGGAACATAACAAAGGAAGCTGGGCCAGTCAGCATGACATTTACAATACCCATGTACAATGTCTCCAATCTTCAGGTGAAATACTTGCAAAT AGCAAAGAAATCGAGCTCATACAATCCATACAGGTGGGTGAGATATGTAACGCAGGCCAACTCATATGTTGCACGCATTTGA
AA sequence Show only first row Show all	>Lus10003537 pacid=23165738 polypeptide=Lus10003537 locus=Lus10003537.g ID=Lus10003537.BGIv1.0 annot-version=v1.0 MISQFFVLSQRGDNIVFRDYRGDVQKGSAEIFFRKVKFWKDDGEAEAPPVFVGCLYNSKFVHPFILYLHLHLPVYLLISSIGLIQQNVDGVNYFHVKVVG LLFVATTRVNMSPSLVLELLQRIARVIKDYLGILNEDSFRKNFVLVYELLDEVIDFGYLQTTSTEVLKSYVFNEPIVIDAVRLQPPNPASIFMQGTKRMP GTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLTVGTNGGRSNYDNRSSSGSGSVILDDCNFHES VRLESFDLDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLIEEARSLRAEVILKFSAEFPSNITANTIIVQMPLPKYTARATFELEPGAVGQTTDFKES TKKLEWGLKKARSFLGVSGGSEHTLRAKLTFSQQLHGNITKEAGPVSMTFTIPMYNVSNLQVKYLQIAKKSSSYNPYRWVRYVTQANSYVARI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	0	1
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	1.0	0.9047
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10026809 [exp]	2.4	0.8597
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	3.5	0.8784
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	3.7	0.8349
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	4.2	0.8711
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	7.0	0.8585
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	7.4	0.8473
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	8.5	0.8545
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	9.4	0.8652
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	10.1	0.8182

Compare expression of checked genes

Lus10003537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.