Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28540 552 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G14340 549 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT3G23340 543 / 0 CKL10 casein kinase I-like 10 (.1) AT5G43320 520 / 0 CKL8 casein kinase I-like 8 (.1) AT1G03930 519 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT1G04440 493 / 3e-173 CKL13 casein kinase like 13 (.1) AT5G44100 490 / 6e-172 CKL7 casein kinase I-like 7 (.1) AT5G57015 442 / 5e-154 CKL12 casein kinase I-like 12 (.1) AT1G72710 441 / 6e-153 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 440 / 8e-153 CKL1, CK1 casein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033913 [exp] 815 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022908 [exp] 688 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10021175 [exp] 529 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 522 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 508 / 3e-179 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 503 / 2e-177 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 495 / 3e-174 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 486 / 1e-170 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1) Lus10006018 [exp] 446 / 2e-155 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226900 [exp] 650 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 644 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.008G168100 [exp] 557 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.010G070400 [exp] 553 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 506 / 1e-178 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.003G043500 [exp] 451 / 6e-157 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 451 / 7e-157 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 446 / 9e-155 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 441 / 9e-153 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 389 / 3e-133 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003539 pacid=23155670 polypeptide=Lus10003539 locus=Lus10003539.g ID=Lus10003539.BGIv1.0 annot-version=v1.0 ATGGACAAATTGAAGGTTGACCAGGTCGTTGGTGGCAAATTTAAACTTGGAAGGAAGATTGGGAGTGGGTCATTTGGAGAGCTCTATTTGGGTGTGAATG TACAAACTGGTGAAGAAGTTGCGGTTAAGCTGGAATCTGTGAAGACCAAGCACCCTCAGCTTCAGTATGAGTCAAAACTGTATATGCTTCTCCAAGGAGG GACTGGAATTCCCCACCTCAAGTGGTATGGAGTTGAGGCAGACTACAATTGCATGGTTATTGATCTTCTTGGACCAAGTATGGAAGATCTATTCAACTAT TGTAACAGGAAATTTACTCTGAAAACAGTGCTAATGCTTGCCGATCAACTGATTAACCGAGTTGAATACATGCATTCAAGAGGGTTTCTTCACCGTGACA TCAAGCCAGACAACTTTTTGATGGGTCTCGGTCGCAAAGCCAATCAGGTCTATGTAATTGATTATGGACTCGCAAAGAAATACAGAGATCTTCAGACTCA TAAGCACATCCCATACAGCCTCCCATGGCAAGGATTGAAGGCCGGCACAAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAGTTCAAACTTCCATA GAGTCGCTTTGTAAATCATATCCATCCGAGTTTGTATCATACTTCCATTATTGCCGTTCATTGCGGTTTGAAGACAAGCCAGACTATTCATATTTGAAGA GGCTTTTCCGTGACTTATTTATTCGGGAAGGTTATCAATTTGACTATGTTTTTGATTGGACTGCATTAAAGTATCCTCAAGTGGGTTCTAGCTCCAGAGC ACGAGTAATTGGGAAACCAGGTCATGCTCTTGCAGGCCCATCTGCAGAAAGACCGCCTGAGAGAGTCTCTGTTGGAAAAGAGATCCGCGAGAGATTCTCA GGTGCAGTCGAGGCTTTCTCGACCAGAAGAATCACAAGTTCTAGTCCACTTGAAAGTTCCAGAACCCGGACAAATGAGACACAGCCGGAGGCAGATAAAG GCCGCAGCACGTCTAGGCATGGTAGCAACGCGAGACGAGCAATCCTCCCCAATGGGAGGCCAAGTTCGTCAGGTGACCATGGTGACAGCCGCATGAAGAG AACACACAATGCTGCTGGCCAAATGACTTCTTCGACGCAGCAGAGAATTTTACCGGTGTACGAACCCATAAAATCTTCCGGTGCACGAGCTGCAGCAGCT GGCGGTGTGAAATCTCGCGAGGAAAGTCTAAAGAGCTTTGAGTTCCTCACACTTAATCGGCGATGA
AA sequence Show only first row Show all	>Lus10003539 pacid=23155670 polypeptide=Lus10003539 locus=Lus10003539.g ID=Lus10003539.BGIv1.0 annot-version=v1.0 MDKLKVDQVVGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLQYESKLYMLLQGGTGIPHLKWYGVEADYNCMVIDLLGPSMEDLFNY CNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYSLPWQGLKAGTKKQKYDKISEKKVQTSI ESLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTALKYPQVGSSSRARVIGKPGHALAGPSAERPPERVSVGKEIRERFS GAVEAFSTRRITSSSPLESSRTRTNETQPEADKGRSTSRHGSNARRAILPNGRPSSSGDHGDSRMKRTHNAAGQMTSSTQQRILPVYEPIKSSGARAAAA GGVKSREESLKSFEFLTLNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	0	1
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	4.2	0.9182
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	9.8	0.8992
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	12.2	0.9169
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	20.4	0.8980
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	20.4	0.8695
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	21.4	0.8875
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	21.4	0.8958
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	22.2	0.8856
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	22.3	0.8985
AT1G54920			unknown protein		Lus10004472 [exp]	22.5	0.8593

Compare expression of checked genes

Lus10003539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.