Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20470 845 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 813 / 0 Protein kinase family protein (.1) AT3G23310 809 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 806 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G30640 702 / 0 Protein kinase family protein (.1) AT4G33080 640 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 627 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 610 / 0 Protein kinase family protein (.1.2) AT1G48490 269 / 1e-78 Protein kinase superfamily protein (.1.2.3) AT5G62310 264 / 5e-77 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033911 [exp] 1015 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10011814 [exp] 835 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 804 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10005707 [exp] 629 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10042650 [exp] 627 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10005470 [exp] 267 / 5e-79 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031332 [exp] 266 / 3e-77 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10027196 [exp] 263 / 3e-76 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 258 / 8e-75 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226700 [exp] 929 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 892 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G167800 [exp] 859 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 842 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 776 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.006G224800 [exp] 656 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.006G146900 [exp] 649 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G125800 [exp] 626 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 602 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.015G035600 [exp] 271 / 3e-79 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003541 pacid=23155647 polypeptide=Lus10003541 locus=Lus10003541.g ID=Lus10003541.BGIv1.0 annot-version=v1.0 ATGGAATCCAAGCGGAGCTGGTTACACAAGTTTCAGCCGCGAGACAAAATAAGGAGCACGACGAGGCGGAAGGAGGGCGGAGATGGCGGTGGCGACAGCA GGGATGATGGCCCAAGGGACGATGAGGAAGGAGGTATGTCCAACACGACCAAGCAGAGAGTTGCAGCAGCCAAGCAGTACATCGAGAATCATTACAAGGA GCAGATGAAGAATCTCCAGGAGCGCAAGGAACGACGGATTTTGTTGGAGAAGAAGTTGGCTGATGCTGATGTATCTGAGGAGGATCAGAGCAACCTACTT AAATTCTTGGAACAGAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAAATGGGCGTTGATGACTTTGAACTTCTGACTATGATTGGCAAAGGCGCTT TTGGAGAGGTTAGAGTCTGCAGGGAAAAAACAACTGGTCATGTTTTTGCTATGAAGAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAAGTTGAGCA TGTGAAAGCTGAAAGGAACCTACTTGCAGAGGTTGACAGCAATTGTATAGTGAAGCTGTACTGCTCTTTCCAAGATGAGGAGTTCCTTTACCTTATTATG GAATATCTTCCTGGTGGGGACGTGATGACATTGCTTATGAGAAAAGACACCCTGACGGATTATGAAGCTCAATTCTATGTTGCAGAAACAGTTTTGGCTA TTGAGTCTATTCACAAGCATAACTACATTCATAGGGACATCAAGCCTGATAACTTACTTCTGGATAGATATGGTCACTTGAGACTGTCTGATTTTGGGCT GTGTAAACCATTAGACTGCAGTACCATTCAAGAAGGGGATTTTGCAGTGGCCAACAGCCCTAACGCGTCTACACAAAATGAAGATCGTGCAGGCGCTCCA AAGCGCACTCAACAGGAACAATTACAACATTGGCAGAAGAACAGAAGGACCTTGGCGTATTCCACTGTTGGTACACCTGACTACATTGCTCCAGAAGTAC TTTTGAAGAAAGGCTATGGAATGGAGTGTGACTGGTGGTCGCTTGGAGCAATCATGTACGAAATGCTTGTGGGCTATCCGCCTTTTTATTCAGATGATCC CATGTCAACATGTAGAAAGATAGTAAACTGGAAAACTCATTTGAAATTCCCAGAAGAAGCAAAATTATCTCCAGAAGCAAAGGATCTCATCAGCAACCTC TTGTGCAATGTAAACCAGAGGTTGGGGACAAATGGTTCTGCTGAAATAAAGGAACATCCATTCTTCAAAGATATTGAATGGGAACATATTTATGATATAG AAGCTGCTTTTATTCCAGAGGTGAATGATGAGCTGGACACGCAAAATTTTGAAAAGTTCGAAGAGTCCGAACACCATCCTCAAACATCCTCAAAAACTGG TCCATGGAGAAAGATGATTTCTTCAAAAGACCTGCATTTTGTGGGATACACGTACAAAAACTTCGAAATTGTGAATGATTATCAAGTTCCTGGGATGGCT GAATTGAAGAAGAAGGATACAAAGCCAAAGAGGCCGTCTGTGAAGTCGCTTTTTGAAGGGGATTCGGAGGCATCAGAATCGTCAGAAACGGCTTCGAGCG ATCAGCAGCAGCAGGTTCAAGGGAGCTTTCTGAACATGTTGCCTCCAGAACTGGAAGTAACTGAGAAACAGCACGACTCTGCTTAA
AA sequence Show only first row Show all	>Lus10003541 pacid=23155647 polypeptide=Lus10003541 locus=Lus10003541.g ID=Lus10003541.BGIv1.0 annot-version=v1.0 MESKRSWLHKFQPRDKIRSTTRRKEGGDGGGDSRDDGPRDDEEGGMSNTTKQRVAAAKQYIENHYKEQMKNLQERKERRILLEKKLADADVSEEDQSNLL KFLEQKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVFAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLIM EYLPGGDVMTLLMRKDTLTDYEAQFYVAETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTIQEGDFAVANSPNASTQNEDRAGAP KRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPEEAKLSPEAKDLISNL LCNVNQRLGTNGSAEIKEHPFFKDIEWEHIYDIEAAFIPEVNDELDTQNFEKFEESEHHPQTSSKTGPWRKMISSKDLHFVGYTYKNFEIVNDYQVPGMA ELKKKDTKPKRPSVKSLFEGDSEASESSETASSDQQQQVQGSFLNMLPPELEVTEKQHDSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	0	1
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	3.2	0.9228
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	3.9	0.9050
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	5.7	0.9206
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	7.7	0.9091
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	9.4	0.8174
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10004624 [exp]	12.4	0.8216
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	15.4	0.9097
AT1G69400			Transducin/WD40 repeat-like su...		Lus10014343 [exp]	15.9	0.8809
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10026114 [exp]	15.9	0.9011
AT1G75150			unknown protein		Lus10010814 [exp]	17.1	0.8902

Compare expression of checked genes

Lus10003541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.