Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18760 1425 / 0 CHR8 chromatin remodeling 8 (.1) AT5G63950 347 / 2e-101 CHR24 chromatin remodeling 24 (.1) AT2G25170 288 / 5e-80 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G19310 275 / 1e-76 Homeotic gene regulator (.1) AT3G06010 266 / 2e-73 ATCHR12 Homeotic gene regulator (.1) AT3G19210 263 / 2e-73 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT3G06400 264 / 6e-73 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G28290 266 / 2e-72 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G31900 259 / 5e-71 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G18620 258 / 1e-70 CHR17 chromatin remodeling factor17 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033909 [exp] 2100 / 0 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10037696 [exp] 357 / 1e-104 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10015690 [exp] 353 / 1e-103 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10041019 [exp] 294 / 1e-81 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 293 / 2e-81 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041735 [exp] 271 / 1e-76 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10034064 [exp] 270 / 1e-74 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 269 / 2e-74 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10012798 [exp] 268 / 5e-73 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226500 [exp] 1451 / 0 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 357 / 8e-105 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 355 / 4e-104 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.006G262200 [exp] 287 / 2e-79 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 286 / 3e-79 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.017G012400 [exp] 280 / 3e-79 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.008G205600 [exp] 268 / 2e-74 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G019150 [exp] 272 / 3e-74 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G021400 [exp] 268 / 3e-74 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 262 / 3e-74 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003543 pacid=23155645 polypeptide=Lus10003543 locus=Lus10003543.g ID=Lus10003543.BGIv1.0 annot-version=v1.0 ATGGGGGAAATTGATGATAAGGTTTTGCTCAGCAGCTTGGGTGTTACTTCGGCGAATCCTGAGGACATTGAACGTAGCATTCTAGCTGAGGCAGCAACAA CCCATGGGGAAAATAGTTCCGATGGAGGAAATAAAATTAATGAGGAGCCTCAGCAGAGTTCAGAAAGCACCAATCCATTGTCAACGAGTCAGGCCACACT CCAAAGTAAACTAAGGGCTGTTCAATATGAAATAGATGCTGTTGCATCCATTGAACAAGAGAGGACCGTAGATACTGATCCTGACTCTGAAGGTGCTTAT GATGGCACGCCAGGCGAAGAAGAGAAAGAAAAGGAAAAAGCTGGAGCTAGGATTTCTTCAAATGGTTCAACTCTTCAACAAGCATTAGCAGCTGATCGGC TAAGAAGTCTAAAGAGAACGAAAGCTCAAATTGAAAAGGAATTATCCGATCTGCATCAGAATACAGGTGGCAGGGATGACAAGCATAAGAAATTGTTAGA AGATCTAGTAAAGGAGGAGTACTTACCAAAAAGGAAATCAAAAGTTCCAAAAGAAACTAAAAAACGTGAAGGGAAGCGTCAGAAGGCAGTTTCATTTTCT GATGATACTGATTTCGATGCTGCTCTAGATGCAGCATCTAGGGGATTTGTTGAAACAGAAAGGGATGAGTTAGTCAGGAAGGGAATTTTAACTCCTTTTC ACAAGCTTGAAGGGTTTGAACGCCGCCTACAACAACCAGGTCCATCTAGTGTATCTGGGAATGAAGAACTAGGTGATGATCTTATCTCTGAAAGACTTCT AAAGGCTGCTCAGTCAATATCTGAATCTATGAAAGCTCGCCCAACAACTAAGCTTCTTGATCCTGAAGAATTGCCGAAGCTTGATGCACCAACTCTTCCC TTTCAGAGGTTGAAGACACCAGTGAAACTTCATGAGTCCTCAGATAACAATGCAGCACGGAAGAAGAGGAAGCGTCCTTTGCCTGGCCAGAAATGGAGAA AACGTATTTCACGAGAAGAAATCCCTTTGGATGATGGTGCTACACAGGCTAACTTGGTTACATCCAGCAATGAAGAACTGCTGCAGGATTCTGAAGATGT TGAAGAGGCAGACTGTCCTTTTGTAACGCTTGAAGGAGGATTAAAAATTCCGGACGCATTTTTTAGCAAGCTTTTTGATTACCAGAAAGTAGGGGTGCAA TGGCTGTGGGAATTGCACTGCCAGAGAGCAGGTGGAATTATTGGAGATGAAATGGGCCTTGGTAAGACAATCCAAGTCTTGTCTTTCCTTGGAGCGTTGC ATTTTAGTAATATGTACAAGCCAAGCATTGTCATCTGTCCTGTTACGCTATTGCGTCAATGGAGAAGAGAGGCACGCGAGTGGTATCCCAGGTTTCATGT GGAGCTACTACATGATTCTGCTCGGGATCCTTCTAGAAAGAAAAGAGAAAAATCTTATGAAAGTGATGATGATAGTGAAGCTTCTTTAGACAGTGATAAT GAAGTAGTGAGTTTATCATCTAAGAAAGCCGACAAATGGGATTCATTAATTAACCGAGTTTTGAAGTCAAAGTCGGGGTTGCTCATTACCACTTATGAGC AACTTCGATTGCTCGGGGAGAAATTGCTTGACATTGAATGGGGATATGCAATTCTGGATGAAGGACATCGAATTCGGAATCCAAATGCTGAAGTCACACT AGTCTGCAAACAGCTTCAAACAATTCACCGGATAATAATGACAGGAGCACCGATTCAGAATAGGTTAAGCGAGTTGTGGTCTTTGTTTGATTTCGTCTTT CCGGGCAAGTTGGGGGTCCTGCCAGTTTTTGAAGCAGAATTCGCTGTTCCAATTTCTGTTGGCGGTTATGCAAATGCTTCACCACTACAAGTATCTACAG CATATAGGTGCGCTGTGGTGTTACGTGACTTGATTATGCCATACTTGCTAAGGCGGATGAAAGCAGATGTTAATGCTCATCTTCCTAAAAAGACCGAACA TGTTCTCTTTTGTAGCCTCACACCGGAGCAGCGATCTGTATATAGAGCATTTCTTGCTAGCACTGAGGTCGAGCAAATTCTCAATGGGAGTAGGAATTCA TTGGCTGGGATTGATGTAATGCGGAAGATATGTAACCACCCAGATCTACTTGAAAGGGAGCATTCTTCCAACAATCCAGACTATGGGAATCTTGAGCGCA GTGGAAAAATGAAAGTTGTTTCACAGGTGCTGAATGTTTGGAAGGAGCAGGGTCACCGTGTTCTTCTTTTCACTCAAACTCAGCAAATGCTTGACATCCT TGAAAATTTCTTGGTTTCCGGTGACTACACCTATCGGAGAATGGATGGTCTTACTCCTGTGAAGCAGAGAATGGCCTTGATTGACGAATTTAATGATAGT GTTGATATCTTTGTGTTTATCTTGACTACAAGGGTTGGTGGGTTAGGGACAAATCTAACTGGTGCGGACAGGGTGATCATTTTCGACCCGGACTGGAACC CATCAAATGATATGCAGGCTAGGGAACGAGCTTGGCGTGTTGGTCAGAAAAGGGATGTGGTTGTATATAGACTGATTACTCGTGGGACGATCGAGGAGAA AGTCTACCACAGGCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAACAAAGAAGATTCTTTAAAGCTCGTGATATGAAGGATCTA TTTGTATTGAGTGATGATGTAGAAGGTGGATCAACCGAGACATCCAATATTTTCAGCCAGTTGACGGAAGATGTCAACGTTGTTGGTGCGCAAGTGGAAA AGCTAGACAGTAATAAACAGATTAGAAAGGGTGCAACGGATGAAAGTAACAGCTTAGAGGTGAAACCAACCAGGAGGAAAGGAAAAGAGAAGGCTGATCA CAAAGACCAAGAAATCGACGAGGAGACCAACGTCTTGAAGAGTCTTTTTGATGCCAATGGCATACATAGTGCCATCGATCATGATGCCATTGTGAGTGCG AACGATGAACAGAAGGTGAGGATGGAGGAACAAGCATCTCAAGTTGCGCAAAGAGCAGCAGAGGCATTGCGCCAGTCAAGGGTGATTCGCAGCCGTGAAA GTATTTCAATCCCAACATGGACAGGAAGGTCAGGCTGTGCCGGGGCGCCATCGACAGTTCGACAGAAGTTCGGATTCACTCTGAGCTCTCGGATTGTTAA GTCGGCCAATGAGTCATCCAGCAATAAAACAAGCAGCAGCCTGAACGGTGTGGCTGCCGGGGCATCCGCTGGAAAGGCGTTGTCTTCTGCCGAGCTGCTT GCTAAAATTCGTGGAAACCAAGAAAGAGCAGCTGGTGCCGGGAACGGAACTCCTAGTAGAGGATCTCAAATTGCAACTAGCATCCAGCCGGAAGTGTTGA TTAGACAAATGTGTACATTCATGCAACAAAGGAGTGGAAGATGCGATTCCGGAAGCATCGTGGAGCACTTCAAAGATAGGGTTCCGTCAAAGGATCTGCC GTTGTTTAAGAATCTTTTGAAAGAAATAGCTATGCTGAAGGACGACCCGAATGGGAAAGCATGGGTTCTGAAATCAGAATATCAATAG
AA sequence Show only first row Show all	>Lus10003543 pacid=23155645 polypeptide=Lus10003543 locus=Lus10003543.g ID=Lus10003543.BGIv1.0 annot-version=v1.0 MGEIDDKVLLSSLGVTSANPEDIERSILAEAATTHGENSSDGGNKINEEPQQSSESTNPLSTSQATLQSKLRAVQYEIDAVASIEQERTVDTDPDSEGAY DGTPGEEEKEKEKAGARISSNGSTLQQALAADRLRSLKRTKAQIEKELSDLHQNTGGRDDKHKKLLEDLVKEEYLPKRKSKVPKETKKREGKRQKAVSFS DDTDFDAALDAASRGFVETERDELVRKGILTPFHKLEGFERRLQQPGPSSVSGNEELGDDLISERLLKAAQSISESMKARPTTKLLDPEELPKLDAPTLP FQRLKTPVKLHESSDNNAARKKRKRPLPGQKWRKRISREEIPLDDGATQANLVTSSNEELLQDSEDVEEADCPFVTLEGGLKIPDAFFSKLFDYQKVGVQ WLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWRREAREWYPRFHVELLHDSARDPSRKKREKSYESDDDSEASLDSDN EVVSLSSKKADKWDSLINRVLKSKSGLLITTYEQLRLLGEKLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTIHRIIMTGAPIQNRLSELWSLFDFVF PGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTEHVLFCSLTPEQRSVYRAFLASTEVEQILNGSRNS LAGIDVMRKICNHPDLLEREHSSNNPDYGNLERSGKMKVVSQVLNVWKEQGHRVLLFTQTQQMLDILENFLVSGDYTYRRMDGLTPVKQRMALIDEFNDS VDIFVFILTTRVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRVGQKRDVVVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDL FVLSDDVEGGSTETSNIFSQLTEDVNVVGAQVEKLDSNKQIRKGATDESNSLEVKPTRRKGKEKADHKDQEIDEETNVLKSLFDANGIHSAIDHDAIVSA NDEQKVRMEEQASQVAQRAAEALRQSRVIRSRESISIPTWTGRSGCAGAPSTVRQKFGFTLSSRIVKSANESSSNKTSSSLNGVAAGASAGKALSSAELL AKIRGNQERAAGAGNGTPSRGSQIATSIQPEVLIRQMCTFMQQRSGRCDSGSIVEHFKDRVPSKDLPLFKNLLKEIAMLKDDPNGKAWVLKSEYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	0	1
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	1.0	0.8267
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	3.5	0.7857
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	6.2	0.7823
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	6.9	0.7447
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	7.7	0.7591
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	8.9	0.6894
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	9.2	0.7671
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	9.4	0.7457
AT5G66820			unknown protein		Lus10002968 [exp]	9.8	0.7760
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	10.6	0.7378

Compare expression of checked genes

Lus10003543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.