Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03900 308 / 1e-105 ABCI18, ATNAP4 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) AT3G58600 141 / 4e-40 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033908 [exp] 397 / 2e-140 AT1G03900 351 / 2e-122 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Lus10000617 [exp] 142 / 2e-40 AT3G58600 324 / 2e-111 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Lus10000356 [exp] 138 / 4e-38 AT3G58600 311 / 2e-105 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226400 [exp] 334 / 1e-115 AT1G03900 322 / 3e-111 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Potri.002G036400 [exp] 330 / 2e-114 AT1G03900 320 / 1e-110 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Potri.013G117900 [exp] 151 / 6e-44 AT3G58600 331 / 3e-114 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Potri.019G089800 [exp] 147 / 1e-42 AT3G58600 337 / 1e-116 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF07933 [flax] [poplar] DUF1681 Protein of unknown function (DUF1681)
Representative CDS sequence Show only first row Show all	>Lus10003544 pacid=23155672 polypeptide=Lus10003544 locus=Lus10003544.g ID=Lus10003544.BGIv1.0 annot-version=v1.0 ATGTCATTCGAGGAAGATGAAGAATCGTTCGAGCACACACTCCTTGTCGTCAGGGAGGTGGCGATCTACAAGATCCCGCCGCGCTCCACATCCGGCGGCT ACAAGTGCGGCGAGTGGCTACAGTCGGACAAGATCTGGACGGGCCGGCTCCGGGTAGTGTCGTGCAAGGATCGATGCGAGATCAGGCTGGAGGATCCCAA CTCCGGTGAGCTCTTCGCCGCCTGCTTCGTCCCGCCGGGACAGCGGGAGACGTCCGTGGAACCCGTGCTCGACTCTTCTCGCTACTTCGTTCTCAAGATC GAGGACGGCTCCGGTAAGCACGCCTTCATCGGGCTCGGGTTCGCCGAGAGGAACGAAGCGTTTGATTTCAACGTCGCGCTCTCCGATCACGACAAGTACG TCCGCAGGGAACACGAGAAGAAGGAAACTGGAGAGTCCAGCGCCCAGGGCGGCGGCGATGCTCACATCGACATCCATCCCGCCGTGAATCATCGATTGAA GGAAGGGGAAACGATTCGGATAAGTGTAAAGCCTAAGCCGGCTACAAGTGGAACCGGAATGCTGTCAGCTGCTGGATTAGCCGGCGGGGCAACGGCGATC GGGAAGGCTAAAACTTTGAGTCTTGCCCCACCTCCAGCTGGAGCTGCGAAGATAAGGTCGCCGTTGCCGCCACCGCCGAATGATCCTGCGGTTGTTCGGA TAAGTACAGCTGGTGCTAGAGCAGCCAAGGACAGTAGCAGCACTAATACCAAGAGTTCTTCAGATTCATTATCAGATTTTTCACAGCTCGAGAGGAATCT CCCGGCGGCGGCGGCGGCTTCAACTGGGGCAGCGAAGACAAAAACTGCATCAGGATGGGCGGCTTTCTAA
AA sequence Show only first row Show all	>Lus10003544 pacid=23155672 polypeptide=Lus10003544 locus=Lus10003544.g ID=Lus10003544.BGIv1.0 annot-version=v1.0 MSFEEDEESFEHTLLVVREVAIYKIPPRSTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVPPGQRETSVEPVLDSSRYFVLKI EDGSGKHAFIGLGFAERNEAFDFNVALSDHDKYVRREHEKKETGESSAQGGGDAHIDIHPAVNHRLKEGETIRISVKPKPATSGTGMLSAAGLAGGATAI GKAKTLSLAPPPAGAAKIRSPLPPPPNDPAVVRISTAGARAAKDSSSTNTKSSSDSLSDFSQLERNLPAAAAASTGAAKTKTASGWAAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	0	1
AT1G21830			unknown protein		Lus10018177 [exp]	3.0	0.9277
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	3.3	0.9532
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	3.5	0.9396
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	4.7	0.9513
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	5.6	0.9028
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	7.9	0.9411
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	8.8	0.9344
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	8.9	0.9328
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	9.2	0.9329
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	10.2	0.9366

Compare expression of checked genes

Lus10003544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.