Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21150 209 / 9e-64 HAP6 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024912 [exp] 282 / 1e-95 AT4G21150 360 / 2e-120 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10022911 [exp] 281 / 1e-90 AT4G21150 868 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10033906 [exp] 89 / 1e-22 AT4G21150 57 / 1e-10 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036600 [exp] 247 / 6e-78 AT4G21150 806 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Potri.005G226100 [exp] 234 / 5e-73 AT4G21150 743 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05817 [flax] [poplar] Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II
Representative CDS sequence Show only first row Show all	>Lus10003545 pacid=23155675 polypeptide=Lus10003545 locus=Lus10003545.g ID=Lus10003545.BGIv1.0 annot-version=v1.0 ATGGCCAGGAGTCCGATACTATTTCTAGCTCCGATCTGTGCTGCGGCTTTGATATGCTCACTTGCTGCGGCTGCTTCAGTCTTCCAGCCTATCTCTGACT CTCACCGATCCGCTGCATTAGAGATCTTCGATAGATCCTTCAGCAGCTTGGAAGAAACATACGAGGCACTGAGAACATTTGAAGTTCTTGGAGTCGAGAA CAAACCTGATGTAGGGACGGCAGCTTGCCTCTCTGTGTCGCAGACCCTGGGTTCATCATCTTCGAGTTTGAAAGATACATTTTACGCTTTGAAGGTCAAT GGAGTTTTGAAGTGTGAGGTCGATGTGGAGGCTGTTGAGGGAATCATTTCCAGACTTCAGTCTGCTGTCAGCGGCGCTACTTCATTGCCTGAATTCTATT ATTCAATTGGAGGTTTGGTACTTGTGAAGGATCAAGCCTTGAAGGATGATCTTTATCTTGCTGACGCTGAAGGAATATTTCGTTCCATCAAGGCTTTAAG TCAGAGTGATGGGAAGTGGCGATTCAATTCTAACAACCCTGAGTCTAGCACCTATGCTGCTGGTTTAGCCCATGAGGCTCTAGCTGGAGTTGTCACATTA TCAGCTTCAGAGATTGATCAGTCCCTGGTATACCAAACTCTTTGGCAACCATCTCAGAGTAACACGTAG
AA sequence Show only first row Show all	>Lus10003545 pacid=23155675 polypeptide=Lus10003545 locus=Lus10003545.g ID=Lus10003545.BGIv1.0 annot-version=v1.0 MARSPILFLAPICAAALICSLAAAASVFQPISDSHRSAALEIFDRSFSSLEETYEALRTFEVLGVENKPDVGTAACLSVSQTLGSSSSSLKDTFYALKVN GVLKCEVDVEAVEGIISRLQSAVSGATSLPEFYYSIGGLVLVKDQALKDDLYLADAEGIFRSIKALSQSDGKWRFNSNNPESSTYAAGLAHEALAGVVTL SASEIDQSLVYQTLWQPSQSNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003545 [exp]	0	1
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	2.4	0.9022
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	7.3	0.8878
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	8.0	0.8895
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	8.3	0.9008
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	10.0	0.9021
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	14.4	0.8692
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	15.3	0.8884
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	19.9	0.8659
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	21.3	0.8648
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	21.5	0.8716

Compare expression of checked genes

Lus10003545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.