Plant FIBer expression Database

Lus10003546 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21150 359 / 6e-117 HAP6 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022911
[exp]
500 / 8e-172 AT4G21150 868 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10024911
[exp]
456 / 1e-158 AT4G21150 474 / 4e-163 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10024912
[exp]
74 / 4e-14 AT4G21150 360 / 2e-120 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G226100
[exp]
412 / 1e-137 AT4G21150 743 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Potri.002G036600
[exp]
404 / 4e-134 AT4G21150 806 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05817 Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II
Representative CDS sequence
>Lus10003546 pacid=23155655 polypeptide=Lus10003546 locus=Lus10003546.g ID=Lus10003546.BGIv1.0 annot-version=v1.0
ATGGATGGTTTTGCAAACGGCTGGCAGGTTGGCTCGACGAAAAATGATATACTGAAACTTTTTGAGAGAATTGAAAAGTATGAAGACGGAGCCTTGTATT
TTGACGAGGAAGTGATTGATGATCTTGAGAATCAGAGTCCTATTGCAATTACATGGGTTTCAATCCCCTTAATTCTCTCTCTTCCAGCTACTGTGATCTC
GTTGACTACAAAAGACACAATCAAGGTTAAGGTCAATACTCCACTTGGGTCAGAGGCTCCTCCTCTAACTGTGAAGCTTTTACGAGCCACAAGTGCTGGT
TTGAAGGATAGGTCCGCCATTGAAAGCCAGGAGCTCAAGTTTGATCCTGAACACAAGGTTTATGTCCTAGGCACTTCCAAAAAGAGTGTTGATATGGGCA
AGTACATTTGTGTTTTCGAGATCATATTTCATGATCCTGAGCACACAAAGGCTTATGCAGCGGGAAGTAAAATTGAAGTTCCAGTTTTTGTCACTGGAGC
GGTCAAAGTTGAAAATGCAGAAATTGCAGTCCTTGATAGTGACCTCGGGAGCATCGGATCTCAGAAGAATCTGGATTTCACGGGAGGGAATCTGGTATCA
TTGTCAGCAAACCATCTTCAGAAGTTGAGACTACGTTTTCAATTGTCAACTCCTATTGGAAATCCTTTCAAGCCACATCAGGCTATTCTTAAGCTAACTC
ATGAAAGCAAGGTGGAACATGTATTTATGGTTGGGAATGCCGGAAAGCAGTTTCAGATAGTGCTGGATTTTCTTGGACTGGTGGAGAAATTTTACTATCT
CTCTGGTAAATATGAAATTCAACTCACTGTTGGAGACGCTGTTATGGAGAACCCCTCTTTTAAAGTTATTGGCCATCTTGACCTTGCTCTACCAGAAGCA
CCTGAGAAGGCACCACGAGTTCCTGCACAGCTTGTAGATATGTACTCGAGATATGGACCTAAAGCGGAGATAGGTCATATATTTAGAGCTCCAGAAAAGC
GGCCTCCTCAAGAGCTCTCTCTGGCTTTCTTGGGCCTGACGATTTTGCCTCTGTTAGGGTTCTTAATTGGGGTGAGTTCTGAACTGGCATTTCCCACAGC
ATATACACGTAGGCGTTGCATTAGTCAAAGTTTGCCAACTAATCTGGGAATTGCCAACATAGTATCACGAAATAATGGGCGGAATAATGAAACTACGAAA
CCGTGTAGTATCTTTGAGTTGACTAAACAAGTTTTGTTTTTGGTGCAGCTATTACGGCTGGGAGTAAACCTGAAGAACTTCCCATCTTCGGCATCACCTG
CAGCATTTGCTGCTCTGTTCCATCTGGGCATCGGAGCGGTTCTTTTGCTCTACGTCTTCTTCTGGTTGAAGTTGAATCTGTTCACAACGCTGAGAATGCT
GGGGTTATTGGGAACATTTCTGCTGGTTGTTGGACACAGAACCTTATCGTACCTAGCCTCACCCGCATCCAAGTTGAAATCAGCCTGA
AA sequence
>Lus10003546 pacid=23155655 polypeptide=Lus10003546 locus=Lus10003546.g ID=Lus10003546.BGIv1.0 annot-version=v1.0
MDGFANGWQVGSTKNDILKLFERIEKYEDGALYFDEEVIDDLENQSPIAITWVSIPLILSLPATVISLTTKDTIKVKVNTPLGSEAPPLTVKLLRATSAG
LKDRSAIESQELKFDPEHKVYVLGTSKKSVDMGKYICVFEIIFHDPEHTKAYAAGSKIEVPVFVTGAVKVENAEIAVLDSDLGSIGSQKNLDFTGGNLVS
LSANHLQKLRLRFQLSTPIGNPFKPHQAILKLTHESKVEHVFMVGNAGKQFQIVLDFLGLVEKFYYLSGKYEIQLTVGDAVMENPSFKVIGHLDLALPEA
PEKAPRVPAQLVDMYSRYGPKAEIGHIFRAPEKRPPQELSLAFLGLTILPLLGFLIGVSSELAFPTAYTRRRCISQSLPTNLGIANIVSRNNGRNNETTK
PCSIFELTKQVLFLVQLLRLGVNLKNFPSSASPAAFAALFHLGIGAVLLLYVFFWLKLNLFTTLRMLGLLGTFLLVVGHRTLSYLASPASKLKSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Lus10003546
[exp]
0 1
AT5G54440 CLUB, AtTRS130 CLUB (.1) Lus10021681
[exp]
7.4 0.8576
AT5G08305 Pentatricopeptide repeat (PPR)... Lus10017386
[exp]
14.1 0.8035
AT1G72480 Lung seven transmembrane recep... Lus10013162
[exp]
18.7 0.8551
AT1G34130 STT3B staurosporin and temperature s... Lus10017990
[exp]
22.3 0.8402
AT1G66345 Pentatricopeptide repeat (PPR)... Lus10004045
[exp]
31.5 0.7401
AT1G30300 Metallo-hydrolase/oxidoreducta... Lus10038519
[exp]
42.5 0.8139
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Lus10041127
[exp]
46.0 0.7983
AT5G62580 ARM repeat superfamily protein... Lus10036647
[exp]
46.8 0.8264
AT3G13160 Tetratricopeptide repeat (TPR)... Lus10007620
[exp]
49.2 0.8202
AT1G72480 Lung seven transmembrane recep... Lus10008125
[exp]
49.3 0.8296

Lus10003546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.