Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08620 443 / 1e-137 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G38950 347 / 1e-106 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G20400 353 / 2e-106 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 338 / 3e-102 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 326 / 7e-98 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G28530 174 / 9e-48 NAC ANAC074 NAC domain containing protein 74 (.1.2) AT1G63490 161 / 4e-40 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G56010 141 / 1e-36 NAC NAC1, ANAC021, ANAC022 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) AT3G12977 139 / 2e-36 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G76420 131 / 3e-33 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033903 [exp] 1120 / 0 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10022024 [exp] 453 / 3e-136 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 415 / 3e-123 AT3G04490 1382 / 0.0 unknown protein Lus10033905 [exp] 366 / 1e-118 AT4G28530 271 / 2e-89 NAC domain containing protein 74 (.1.2) Lus10008063 [exp] 379 / 4e-116 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10022915 [exp] 217 / 2e-63 AT4G28530 274 / 7e-91 NAC domain containing protein 74 (.1.2) Lus10008495 [exp] 173 / 1e-43 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10042466 [exp] 143 / 7e-37 AT1G56010 273 / 9e-90 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Lus10026200 [exp] 139 / 4e-35 AT1G56010 254 / 3e-82 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G037300 [exp] 540 / 8e-179 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 457 / 2e-142 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 456 / 3e-142 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.011G155100 [exp] 370 / 4e-112 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.001G440900 [exp] 369 / 6e-111 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.005G225800 [exp] 207 / 3e-60 AT4G28530 270 / 1e-89 NAC domain containing protein 74 (.1.2) Potri.002G037100 [exp] 204 / 3e-59 AT4G28530 276 / 6e-92 NAC domain containing protein 74 (.1.2) Potri.003G126600 [exp] 170 / 1e-42 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.007G065400 [exp] 142 / 3e-37 AT1G56010 337 / 4e-116 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.005G098200 [exp] 141 / 6e-37 AT1G56010 332 / 6e-114 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger CL0029 [flax] [poplar] PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10003548 pacid=23155662 polypeptide=Lus10003548 locus=Lus10003548.g ID=Lus10003548.BGIv1.0 annot-version=v1.0 ATGATAACTGGGCTGAGAGACATTGGGGCTAGTTTGCCACCAGGGTTCAGGTTCTATCCAAGTGATGAGGAGCTGGTTTGCCATTATCTCCTGAAGAAGA TCTCTGATGACCATAATAACCAAGTCCTCCACGGCACCCTCGTCCAAATCGACCTCCATACTTGCGAGCCATGGCAGCTCCCTGAGGTGGCGAAGCTGAA CGCGACGGAGTGGTACTTCTTCAGCTTCAGGGACAGGAAGTACGCAACCGGGTACCGCACCAACCGGGCGACCATATCCGGCTACTGGAAAGCCACCGGC AAAGAACGGACGGGAGGGGAGAACAAAAAAAAAAAATCGGACGGTGGTGGACCCATCCACCAAGGAAATAGTTGGGATGAGAAAGACGCTTGTTTTTTAC AGGAACAGAGCTCCCAACGGCATCAAAACTGGGTGGATCATGCACGAGTTCCGCCTCGAGTCCCCTCACATGCCTCCCAAAGGTTTAGCTTGGTTGATGA TGATGGCCAGAGGAGAACCCCCGACCTAAAACCAGAAATGGAGGACTGGGTGCTATGCAGGGTGTTCCACAAAAGCAAAACATCAGAAGAAGAAGAGTAC AACGACATCAACAAATTCAGCCCACCACCATACCATTTGGTCGACACCACCACCACACATAATTACCATCATACCCCTCCTCCAATCTTGACCGCTAATT TGCACCCTTCTTCTTTAACGGCTCACAATCATCATCCCCTGCTCCCCGGGCTCGCTAATTCCTTATCATCAAGTACTATTACCGCCGCCGCACCGCCACG TCAGCAGAGCAGTGGTGTACTACTACCGGCCGGTGGTGGGTCATCGTTGCTGAATATACTTGAGGATAACAGCAATAATAACCATAGTGAGATCAGTTCT AGTAGCTATGGATCTCTGAACCGTCTCCGATCACAACTTGGTGTTGCTTCGAGTACATCTTTTAAATTGAGGAAGGTTGATCAAAGGCTTAGTTCTCTAG CTTCGGTTGTTGATGCTGCAATGTTAAAGAGTTTTCTGATTCAACGGCCATGGATAATCCACGATCAGAGTGATGGTGATCAAATACGAGAGGAATCCAA CTCGGAACAAGTGGATAAGGAGCATTCTTCAAAAACTTGCCTACCAAAAGGAGTTGTTCGAGGATGTCCAGATTGTAGGGATTGCCTCAAGGTGACGGCA AGATGGCAACCCGACAAAGGGAAGAAACAATTACTAGAAGATGCTCCTGTTTTCCACCCCACTGAAGAGGAATTCAAAGATACACTCAAATATATTGTAA ATGTACCTCCCGGGGCAGAACCGTATGGAATTTGTCGTATTGTCCCTCCTCCTTCGTGGCATCCACCTTGCATGATTAGTAAGAAGAGTGTGTGGGAAGA TTCACGATTTGAATCACTAGTTCAGCGCATAGATGGATCGCTGGATCAGAGTTCAGACGACGTTTCTGATTGCTCTGTCATGGAAGGTTTTGAACCAGAA CCTGGTCCACAATTTAGCCTTAAAACTTTCAAGAGATATTCAGATGATTTTGTCTCTCAGTACTTCACTATAGATGAAGTCTTGAACCCAAAGATGGGTT CAAATATGCACGTGAAGCGGAGGGAACCATCTGTAGAGGATATTGAGGGTGAGTACAGAAGAATTATTGAGAGTCCTACTGAAGAGATGGAGGCATGTGA GGGTGAAATATCTTTACGTTTATATGTTTTCCTTGTGATCTGCTGTGATAACCTGGATAGCCATGTTTTTGGCAGTGGATTTCCCAGCAGAAATCAATTT TCAGAAAATGATAGCAATCAGGGCTACGTGAATTCAGGCTGGAACTTGAAAAACACAGCGGTGCTTCCAGATTCACTTCTGTCATTTGAGAACCCAAGTA CTTCTCGCCTATTACAGCCTCGACTGAGAATAGGAATGTGCTTTTCTTCTCTTCCTTGGAAAAATGCAGAGCACCACTTGTATTCTCTCTCATACATGCA TCTTGGTTCCCCCAAAATTTGGTACGCTGTCCCTGGTAGTCATGGTTCAGTGTTTGAAGGTACTATAAAGAAGTACCACTCCGGGCTTGGAAGAAAATAT TCAAAGACACGGCACTATAGGCGGCTATTGAAGTTGACGCCGACTATGTTAAAGTCTGAAGGAATACCTGTCTATCGATGTGTTCAGAATCCTGGAGAGT TTGTTCTTGTCCTACCAAGATCACATTATTCGTACTTTGATAGTGGCTTTAATTGTGGTGTGAGTATTAATTTTGCTCCACTTGGATGGTTACCAAATGG GCAGAATGTTGTCGAATTCTATAGTGAACAAGCAAGAAAGACGTCACTTTCCCAGGATAAGCTGTTGATAGGTGCAGCTGGAGAAGCTGTGAGGGTACAT GACATGGAAAGACGCTTCCGGGAAGGATGGGATCTTAGCGAAAGCTCTCGACCAGCTTCATGTTCATGCAATCCCGATAGATACTCTTGTCTAATTCATG CGAAGCAGCTCTGCTCTTGTCCTTGGAGTAGAAGGTTATTTCTGTACCGTTATGTGATGGATGAGTTAAGAGTTCTCCTTGAAGCCGTGGGAGGAAACCT GACTGCAATCTACAAATGGGCACGGGACGATCTAAATCTTTCGCTGCATTCCCTCGTCTCCGATAAGAGGCCAAAACGGTCAGATGGCAAAGAGTGCAAC ACCGAGGAATCGAAGGAGGAAATTATAGAGCAGCTGTATGGAGGCCAAAGCAGTACTGCTTCTGACATCAAGGAAGAACTGAGAGCTCGGATGCTCCAAC AAAAGTCCATGAATGAAAAGAAACTGATGAAGGGTAAAGCCAGCGTGCCACCGGTTCCTATTACTTCTCAGTCGAGTTCTGTTGCTGATACCGTGCCTGT ACTTGAAGTTTCCTCGGATAGCAGCAGTGAGTCATGCTCTTAA
AA sequence Show only first row Show all	>Lus10003548 pacid=23155662 polypeptide=Lus10003548 locus=Lus10003548.g ID=Lus10003548.BGIv1.0 annot-version=v1.0 MITGLRDIGASLPPGFRFYPSDEELVCHYLLKKISDDHNNQVLHGTLVQIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATISGYWKATG KERTGGENKKKKSDGGGPIHQGNSWDEKDACFLQEQSSQRHQNWVDHARVPPRVPSHASQRFSLVDDDGQRRTPDLKPEMEDWVLCRVFHKSKTSEEEEY NDINKFSPPPYHLVDTTTTHNYHHTPPPILTANLHPSSLTAHNHHPLLPGLANSLSSSTITAAAPPRQQSSGVLLPAGGGSSLLNILEDNSNNNHSEISS SSYGSLNRLRSQLGVASSTSFKLRKVDQRLSSLASVVDAAMLKSFLIQRPWIIHDQSDGDQIREESNSEQVDKEHSSKTCLPKGVVRGCPDCRDCLKVTA RWQPDKGKKQLLEDAPVFHPTEEEFKDTLKYIVNVPPGAEPYGICRIVPPPSWHPPCMISKKSVWEDSRFESLVQRIDGSLDQSSDDVSDCSVMEGFEPE PGPQFSLKTFKRYSDDFVSQYFTIDEVLNPKMGSNMHVKRREPSVEDIEGEYRRIIESPTEEMEACEGEISLRLYVFLVICCDNLDSHVFGSGFPSRNQF SENDSNQGYVNSGWNLKNTAVLPDSLLSFENPSTSRLLQPRLRIGMCFSSLPWKNAEHHLYSLSYMHLGSPKIWYAVPGSHGSVFEGTIKKYHSGLGRKY SKTRHYRRLLKLTPTMLKSEGIPVYRCVQNPGEFVLVLPRSHYSYFDSGFNCGVSINFAPLGWLPNGQNVVEFYSEQARKTSLSQDKLLIGAAGEAVRVH DMERRFREGWDLSESSRPASCSCNPDRYSCLIHAKQLCSCPWSRRLFLYRYVMDELRVLLEAVGGNLTAIYKWARDDLNLSLHSLVSDKRPKRSDGKECN TEESKEEIIEQLYGGQSSTASDIKEELRARMLQQKSMNEKKLMKGKASVPPVPITSQSSSVADTVPVLEVSSDSSSESCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10003548 [exp]	0	1
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	6.6	0.7490
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	8.9	0.7101
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	10.8	0.7220
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10023725 [exp]	13.6	0.6441
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	14.5	0.7176
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	15.2	0.7127
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	16.9	0.6783
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	19.1	0.7014
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	24.3	0.7004
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	27.8	0.7022

Compare expression of checked genes

Lus10003548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.