Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54690 533 / 0 SETH3 Sugar isomerase (SIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033902 [exp] 654 / 0 AT3G54690 543 / 0.0 Sugar isomerase (SIS) family protein (.1) Lus10024902 [exp] 204 / 2e-64 AT3G54690 177 / 6e-54 Sugar isomerase (SIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225700 [exp] 595 / 0 AT3G54690 539 / 0.0 Sugar isomerase (SIS) family protein (.1) Potri.002G037400 [exp] 588 / 0 AT3G54690 514 / 0.0 Sugar isomerase (SIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain CL0067 [flax] [poplar] SIS PF01380 [flax] [poplar] SIS SIS domain
Representative CDS sequence Show only first row Show all	>Lus10003549 pacid=23155659 polypeptide=Lus10003549 locus=Lus10003549.g ID=Lus10003549.BGIv1.0 annot-version=v1.0 ATGGGCTCTCTTCCGCCATCTCTGGACCTTCCTTCTCCCAAGCAGCACCACCAAATCGAGGAATCAACCCTCTTAAACCTCTTCAAATCCCAGCAGGACC ATCTCAATTACTTCTTCCGCCACCTCGACCTCTCCCAAGCCCTCTCCTTCACCCACACCCTTCTCAACCATTCCTCCGGTACCGTCTTCTTCTCCGGCGT TGGCAAGTCCGGCTTCGTCGCTAACAAGATCTCCCAGACCCTCGTCTCCCTCGGCATCCGCGCCTCCTATCTCAACCCTGTCGACGCCCTCCACGGCGAC ATTGGCGCTCTTTCCTCCCTCGATGTCCTCGTCCTCTTCAGCAAATCTGGAAACACCGAGGAGCTCCTCCGTTTGGTCCCCTGCGCGAGGGCTAAAGGAG CTTATCTGGTGTCGGTGACTTCCGTTGAGGGTAATTCCTTGGCTTCCGTCTGTGATATGAACGTGCATTTGCCCCTTGAGAGGGAACTCTGCCCTTTCGA TCTCGCTCCTGTTACGTCAACGGCGATTCAGATGGTGTTTGGAGATACGGTGGCGATTGCTCTCATGGGCGCCAGGAATTTGACTAAAGAACAATACGCT GCTAACCATCCTGCTGGCAGGATCGGAAAGAGCTTGATTTTCAAGGTGAGGGATGTGATGAAGAAGCAAAACGAGCTTCCGATCTGCAGGGAAGGAGATC TGATAATGGACCAGTTGGTTGAGCTGACGAGTAAAGGATGTGGATGCCTTCTTGTCATAGATCCAGATTATCAACTCATTGGGACGTTTACCGATGGTGA TCTCCGGCGAACTCTCAAAGCTAGCGGGGAAGGAATATTCAAGCTTACAGTGGGAAAAATGTGCAACAGGAATCCAAGAACTATCGGTCCAGATTCGATG GCAGTGGTGGCGATGAAGAAGATGGAATCACCACCATCACCTGTACAATTTTTGCCTGTGGTCAGTGATCAGAATGTGTTGATCGGGATCATTACTCTCC ATGGACTAGTCTCTGCAGGGCTTTAA
AA sequence Show only first row Show all	>Lus10003549 pacid=23155659 polypeptide=Lus10003549 locus=Lus10003549.g ID=Lus10003549.BGIv1.0 annot-version=v1.0 MGSLPPSLDLPSPKQHHQIEESTLLNLFKSQQDHLNYFFRHLDLSQALSFTHTLLNHSSGTVFFSGVGKSGFVANKISQTLVSLGIRASYLNPVDALHGD IGALSSLDVLVLFSKSGNTEELLRLVPCARAKGAYLVSVTSVEGNSLASVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKEQYA ANHPAGRIGKSLIFKVRDVMKKQNELPICREGDLIMDQLVELTSKGCGCLLVIDPDYQLIGTFTDGDLRRTLKASGEGIFKLTVGKMCNRNPRTIGPDSM AVVAMKKMESPPSPVQFLPVVSDQNVLIGIITLHGLVSAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	0	1
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	1.0	0.9181
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10003740 [exp]	1.7	0.8575
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	2.8	0.8629
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	3.5	0.8140
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	4.0	0.8078
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	5.0	0.8427
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	5.3	0.8455
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	6.5	0.8129
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	6.6	0.8023
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	6.7	0.7825

Compare expression of checked genes

Lus10003549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.