Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033358 [exp] 85 / 1e-20 ND 57 / 1e-09 Lus10033357 [exp] 83 / 1e-20 AT5G09530 61 / 1e-11 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033359 [exp] 83 / 3e-20 ND 54 / 6e-09 Lus10034812 [exp] 81 / 4e-20 ND 51 / 7e-09 Lus10033897 [exp] 81 / 5e-20 ND 51 / 4e-09 Lus10033898 [exp] 79 / 3e-19 AT5G09530 52 / 1e-09 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033360 [exp] 75 / 1e-17 AT4G38080 49 / 5e-08 hydroxyproline-rich glycoprotein family protein (.1) Lus10034811 [exp] 76 / 2e-16 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034813 [exp] 60 / 4e-12 AT5G09520 50 / 1e-08 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G047400 [exp] 42 / 1e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003550 pacid=23155652 polypeptide=Lus10003550 locus=Lus10003550.g ID=Lus10003550.BGIv1.0 annot-version=v1.0 ATGGAACACAGAATTATCAATCAGTTGCTTGGTGGTGGGGTGAGGGAAGGAATGGCTGGGATGGAGGGCATGGGAGCCAAAGTTGCCTTGGGGATGCTTG GGAGTGGGGGCAGTGTAGTAATTGTAGGGAGCGTAGGTAATGTTGGCTGGGGAAGACTAGGCATTGGTGGCAATGTCGGCAGTGTTGGCTTTGGGAGAGA TGGAATTGTGGAGGGCATTGGTGGTAATGTAGGCAGAGTTGGCTGGGGGAGAGCTGGGATGGTGGTAGGGATTGGTGGCAGCGTTGGCAACTGGAGGAGA TGGCGAGCGGCTAGGCCAACATTGAAGCTCGAGAATGCAAAGGTGGCGATGAAGAGACCAAGTACGAATCCGTTGAAAGAAGCCATGGTCAGTTCGGTGT CGAAGCTGCTACTTCTGCAAGTGTGGAAGGGAAAGAGAGGGAGGTTTTGTGTTGTAGATTTAGGGATGAGGAAAATGTTAATGGGGAGTTGA
AA sequence Show only first row Show all	>Lus10003550 pacid=23155652 polypeptide=Lus10003550 locus=Lus10003550.g ID=Lus10003550.BGIv1.0 annot-version=v1.0 MEHRIINQLLGGGVREGMAGMEGMGAKVALGMLGSGGSVVIVGSVGNVGWGRLGIGGNVGSVGFGRDGIVEGIGGNVGRVGWGRAGMVVGIGGSVGNWRR WRAARPTLKLENAKVAMKRPSTNPLKEAMVSSVSKLLLLQVWKGKRGRFCVVDLGMRKMLMGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003550 [exp]	0	1
					Lus10033359 [exp]	1.0	0.9886
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	1.4	0.9801
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	3.0	0.9756
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	4.0	0.9675
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	7.5	0.9494
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	8.1	0.9518
					Lus10018643 [exp]	8.4	0.9536
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	8.8	0.9342
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	9.5	0.9361
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	9.9	0.9357

Compare expression of checked genes

Lus10003550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.