Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 103 / 2e-25 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 80 / 2e-17 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT2G38195 58 / 7e-10 RING/U-box superfamily protein (.1.2) AT2G38185 57 / 1e-09 RING/U-box superfamily protein (.1.2.3.4) AT2G38220 56 / 3e-09 RING/U-box superfamily protein (.1) AT2G34920 52 / 1e-07 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT5G04460 51 / 3e-07 RING/U-box superfamily protein (.1.2.3) AT1G63900 48 / 2e-06 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT1G30860 48 / 2e-06 RING/U-box superfamily protein (.1) AT1G59560 47 / 3e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033896 [exp] 175 / 7e-53 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009035 [exp] 110 / 6e-28 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 108 / 2e-27 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033895 [exp] 82 / 9e-18 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10002487 [exp] 57 / 3e-09 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10004813 [exp] 56 / 4e-09 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10017455 [exp] 54 / 3e-08 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 53 / 5e-08 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 52 / 1e-07 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G011300 [exp] 151 / 3e-45 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 150 / 8e-43 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 115 / 4e-30 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G167600 [exp] 115 / 6e-30 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 110 / 3e-28 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.006G100400 [exp] 57 / 2e-09 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G251900 [exp] 56 / 3e-09 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.016G116300 [exp] 56 / 6e-09 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.003G156400 [exp] 52 / 9e-08 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.008G030100 [exp] 51 / 3e-07 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003551 pacid=23155658 polypeptide=Lus10003551 locus=Lus10003551.g ID=Lus10003551.BGIv1.0 annot-version=v1.0 ATGGCACTAAGTGCATCCATCTACTCTGCCATGGAGGACAGTCAACAACTTCCAACTAACCCCCATGGTCCTGGAGCTATCAATACAAACGGTTGGGGAG ATTCAGCACTTGTCGACAGTCACAACGGATGGGGAGGAGTACCTGTCGAACCCCCACTTTCAGAAGCAAGCAGCAGTGGACGAGTAGTAGACGAGCCAAC TAGAGAGAATTACAACGGCTGGGATGATTTTCCCAACACTAAGCCAATTAGCAGTGCAGCTCAATCTCAAATGCATCACAATAACCTTCCCGCAGTCCTA AACGTAACTGTTGCGTCCGTTTCGTCAGTAGCTCCTTCTGCCCCTCCGATTCCTGACGTTGCAGCTGCCAACGAAGGTCCTATCCACTATCCATCGATCG ACCTTGCTCCAGTCGATTTCACTGAGAAAGGAGCTTCTTCCGTGACAAGCAACACGAAGGATGATGGTACTGCTTCTTCTTCTTCTTCGCCGGCATCCTT TTGTATAATCTGTTGGGATGCTCCGGTGCAAGGTGCATGCGTACCTTGCGGTCACATGGCTGGTTGTATGGCGTGTTTGAGTAACATCCAAGCGAAGAAA GGAGATTGTCCAGTTTGTAGGGCCAAGATAAACCAAGTTATAAGGCTGTACGCAGTTTGA
AA sequence Show only first row Show all	>Lus10003551 pacid=23155658 polypeptide=Lus10003551 locus=Lus10003551.g ID=Lus10003551.BGIv1.0 annot-version=v1.0 MALSASIYSAMEDSQQLPTNPHGPGAINTNGWGDSALVDSHNGWGGVPVEPPLSEASSSGRVVDEPTRENYNGWDDFPNTKPISSAAQSQMHHNNLPAVL NVTVASVSSVAPSAPPIPDVAAANEGPIHYPSIDLAPVDFTEKGASSVTSNTKDDGTASSSSSPASFCIICWDAPVQGACVPCGHMAGCMACLSNIQAKK GDCPVCRAKINQVIRLYAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	0	1
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	5.7	0.8220
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	8.1	0.8207
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	10.1	0.8099
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	10.2	0.7206
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	12.0	0.8074
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	13.4	0.8074
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	14.0	0.6887
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	14.7	0.8074
AT5G06740			Concanavalin A-like lectin pro...		Lus10029290 [exp]	15.6	0.5993
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	15.7	0.8057

Compare expression of checked genes

Lus10003551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.