Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36070 488 / 2e-170 ATTIM44-2 translocase inner membrane subunit 44-2 (.1) AT2G20510 483 / 1e-168 ATTIM44-1 translocase inner membrane subunit 44-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022930 [exp] 580 / 0 AT2G36070 464 / 1e-159 translocase inner membrane subunit 44-2 (.1) Lus10024888 [exp] 547 / 0 AT2G36070 445 / 8e-154 translocase inner membrane subunit 44-2 (.1) Lus10033894 [exp] 498 / 2e-176 AT2G20510 343 / 8e-116 translocase inner membrane subunit 44-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038300 [exp] 587 / 0 AT2G36070 584 / 0.0 translocase inner membrane subunit 44-2 (.1) Potri.005G224500 [exp] 573 / 0 AT2G36070 545 / 0.0 translocase inner membrane subunit 44-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF04280 [flax] [poplar] Tim44 Tim44-like domain
Representative CDS sequence Show only first row Show all	>Lus10003553 pacid=23155669 polypeptide=Lus10003553 locus=Lus10003553.g ID=Lus10003553.BGIv1.0 annot-version=v1.0 ATGGGAGCTAGAATGCTTGTCCGGGACTTTCTCCTGTCAAGGCAGACTTTCCTCCACCAACTTAAATCACCGCAGGGTTTAAGCATGACGTTAAGGTCGG TGGATTATAGGTGGTCAAGTTTCCGGAGGTTTGGTGTGCTCAATAATGTTCAAGAAGAAGCTATTAGGAATCCCGAGTTTCAGAAGTCAGTTAACGAACT GATGCAGAAAGCTGAAGAACTTAAAGGCATTAAAGATGACCTAAGAGTTAGAACGAAGCAGGCAGCTGAGAAGCTGCACAAGCATGTTGATGGCGTCTGG ACAGAGGCCGAGGCAACTGCTAAAAAGGCTTCCTCAAGTTTCAAAGAGAAGATTTCTGCTGCTTCAGAAGAGGTGAAAGGAACTTTTGGGATGTGGAAGC AAGAGTTTCGCGAGCCAACTGGAACTTCATCTGAAAATGGTCATGGCATTAAAGGAAATTCTAAGGTTTTAAATGGCGAAGAAACATACAAAAGTTCAGA GACAAATGAATCTGCAGAAACGTTGTTTGTAAAATTCAAGTCAAGAATCCGTTCTTTGGAAGTCAGTTCGACGTTCCAAAGATTTAAGGAAGCAAAGATC ACTGAAATAATGAAGAAGTGCTACGAAATCGTGAAGGATGAGTTAACTTGTAATCCAAATGCAAGGAAGCACCTCGAGTTTACTCCTTTTAAAGGTGAAC TAAGCACAAAAACCGATCTTGTTCCAATGTCGAATCCAAAGCAGTCTCCCTTGAGTGAAAAGTGGGAAGCTTTCAGAAAGAAGATGCAAGGAAATCCTCT TATTGAACGTTTCTCTAGAATTAGTGAACCTGTTGTGGAAAAGAGTCAAGAGATCGTAGAAGACATGCGAGAAAGGTGGGAGACAAGTGATAATCCCATT GTTCACAAAATTCAGAATGTAACTGATTCCATCTTTCAAGAAACAGATGCTGCAGCAACAGTCAAAGAAATACGGAGACGGGATCCATCATTTTCTTTGC CAGATTTCGTCTCGGAGGTTCAGGATGCCATAAAACCTGTCCTTAATGCTTACATGAAGGGAGATGCTGAAACTTTGAAGAAGTATTGCAGTCCGGAAGT AATTTCCAGGTGCGAAGGAGAGCATAAAACTTTCAAGAGTCATGGCATCTTCTACGATAATAAGCTTCTTCACGTATCAGATGTGGAAGTAAAAGAGAAC AAAATGATGGGAACATCTCCACTGATAATAGTATCGTTTCAAACCCAGCAGATACATTGTGTACGTGATCTCAGTGGTAAAATTACTGAAGGCGGACAGG ATACCATTCACACTGTATATTATGCATGGGCGATGCAACAAGTAGAGCCACAAGAACTTGGAGAAGGTGCTATCTACCCAATCTGGAGGCTAAGAGAAAT GCAGCAACTTGGTGTGCAAGCCCTCATCTAA
AA sequence Show only first row Show all	>Lus10003553 pacid=23155669 polypeptide=Lus10003553 locus=Lus10003553.g ID=Lus10003553.BGIv1.0 annot-version=v1.0 MGARMLVRDFLLSRQTFLHQLKSPQGLSMTLRSVDYRWSSFRRFGVLNNVQEEAIRNPEFQKSVNELMQKAEELKGIKDDLRVRTKQAAEKLHKHVDGVW TEAEATAKKASSSFKEKISAASEEVKGTFGMWKQEFREPTGTSSENGHGIKGNSKVLNGEETYKSSETNESAETLFVKFKSRIRSLEVSSTFQRFKEAKI TEIMKKCYEIVKDELTCNPNARKHLEFTPFKGELSTKTDLVPMSNPKQSPLSEKWEAFRKKMQGNPLIERFSRISEPVVEKSQEIVEDMRERWETSDNPI VHKIQNVTDSIFQETDAAATVKEIRRRDPSFSLPDFVSEVQDAIKPVLNAYMKGDAETLKKYCSPEVISRCEGEHKTFKSHGIFYDNKLLHVSDVEVKEN KMMGTSPLIIVSFQTQQIHCVRDLSGKITEGGQDTIHTVYYAWAMQQVEPQELGEGAIYPIWRLREMQQLGVQALI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10003553 [exp]	0	1
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	8.7	0.8532
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	14.1	0.9112
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	16.7	0.9014
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	24.0	0.8896
AT5G39130			RmlC-like cupins superfamily p...		Lus10000622 [exp]	24.6	0.9003
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	29.1	0.9040
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	30.0	0.8997
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	31.3	0.8945
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019800 [exp]	38.0	0.8888
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10003058 [exp]	39.9	0.8845

Compare expression of checked genes

Lus10003553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.