Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03890 254 / 2e-79 RmlC-like cupins superfamily protein (.1) AT5G44120 248 / 8e-77 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03880 241 / 4e-74 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 187 / 6e-53 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 129 / 3e-33 RmlC-like cupins superfamily protein (.1) AT1G07750 120 / 6e-30 RmlC-like cupins superfamily protein (.1) AT2G18540 64 / 1e-10 RmlC-like cupins superfamily protein (.1) AT5G26700 53 / 1e-07 RmlC-like cupins superfamily protein (.1) AT3G62020 52 / 3e-07 GLP10 germin-like protein 10 (.1.2) AT1G02335 50 / 7e-07 GL22 germin-like protein subfamily 2 member 2 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033893 [exp] 847 / 0 AT1G03890 272 / 5e-86 RmlC-like cupins superfamily protein (.1) Lus10010341 [exp] 329 / 1e-107 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 327 / 1e-106 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 315 / 5e-102 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 314 / 8e-102 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 313 / 2e-101 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 298 / 1e-95 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 296 / 9e-95 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 287 / 4e-92 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224400 [exp] 469 / 4e-163 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 335 / 8e-110 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 331 / 2e-108 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 328 / 2e-107 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 322 / 5e-105 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 316 / 9e-103 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 299 / 2e-96 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 271 / 2e-85 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.007G047200 [exp] 112 / 4e-27 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 108 / 5e-26 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10003554 pacid=23155657 polypeptide=Lus10003554 locus=Lus10003554.g ID=Lus10003554.BGIv1.0 annot-version=v1.0 ATGATGGCAACCAAACTAGCCGCCGCATTCCTTGTCCTCTCTTGTCTCGCCGCCGCCGCCACTTCCGCCGAGCACGATCAAGGCCGGACGACGATCACTC CTCTGGAGTACCTGGCTCAGCAATGCAACCTCGACCGCATCTCCCCAGTCCAGCCTAACTTCCACCTGCAATCCGAAGGTGGAGTCACCGAGATGTGGAA CCCCCACGAGGAACAGTTCATCTGCGCCGGCGTCGCTCCGTTCCGTGATTGCATCCAGCCCCAATCCCTCTCCGTCCCCAAGTTCTTCCCCGCCCCTCGC CTCGTCTATGTCCAACAAGGGAGCGGAGTGTTGGGGTTGAACTTCCCGGGATGCCCGGCGATGTACCACAGCGGGCAGGCACAAGGACAACAGCAGAGGG GATCGAGGAGGATGATGGGAGGAAGCGGAGGAGACGAGCACCAAAAGATCCACAGGATTCGCGAGGGTGACGTCATCGCCATCCCTGCCGGCGTTGCTAC TTGGGGCTACAACGACGGTAACCAGGACCTCGTCTACGTCACCCTTGTTGACCTCAACAACGACGACAACCAGCTCGATCAAAACCTCAGGCGGTTCTTG CTGGGAGGAGGGCAATCCGATCAGCAAAGGCAGAGCAGGCAGACATGGGGGAGGAGGACTTACCAGATAGGGGAAGGAAGGGAAGCTGGTGGGCAGTCAC TTATGTCATCAGCCAACGTCTTTCAAGGATTCGACGAGGAGCTGATCGCCGAGGCGTTCAACGTTCCAACGGAGACCGTCAGGAGGATGCAGAACGACAA CAGGGGTAGTATCGTCAGATGCCAGGAACAGATGAGCTTCGTTACCGAGGAAGAACAACAGATGCAGGAGATGGACAGGTGGCGCCAATCTAAAGGAGGC AGGTACAACATCAACGACGAAGAAAACGGAATCGAAGAGACCTACTGCAGCATGAAGATCAAGCACAACCTGGAGAAACCACTCCACGCCGATTTCTTCA GCAGCGATGCTGGTAAGATCAACGTCGTCAACCGTGAAAAGCTCCCAATCCTTGGCTACTTGGACATGAGCGCCGAACGAGGCACCATTTTGCCCAACGC AATGTACACCCCACACTGGTCAATGACAGACCACAGAGTGGTGTACGTGGTGGCCGGAGAACTGCAGGTGCAAATCTCCGACGACAAAGGAAACCAGATC ATGAACAACAGAGTGCAGGAAGGGGAAATGTTCGTGATCCCACAGTTCTACGCCACAATGGGAATGGCAGGGAACCAAGGGTGTGAGTATCTGACGTTTA AGACGTCTGGGAAGCCGATGAAGCATCAGATTGCAGGGTACACATCAGTGATGAGGGCGATGCCGATCGATGTGATCAGCAACGCCTTCCAGATGTCGCC TAGGGAGGCAGAGCAGCTGAAGATGAACAGAGACCCTGAGTCCATGTTGCTCTCTCCAACCAGAGGAAGCAGCAGGGTTTAG
AA sequence Show only first row Show all	>Lus10003554 pacid=23155657 polypeptide=Lus10003554 locus=Lus10003554.g ID=Lus10003554.BGIv1.0 annot-version=v1.0 MMATKLAAAFLVLSCLAAAATSAEHDQGRTTITPLEYLAQQCNLDRISPVQPNFHLQSEGGVTEMWNPHEEQFICAGVAPFRDCIQPQSLSVPKFFPAPR LVYVQQGSGVLGLNFPGCPAMYHSGQAQGQQQRGSRRMMGGSGGDEHQKIHRIREGDVIAIPAGVATWGYNDGNQDLVYVTLVDLNNDDNQLDQNLRRFL LGGGQSDQQRQSRQTWGRRTYQIGEGREAGGQSLMSSANVFQGFDEELIAEAFNVPTETVRRMQNDNRGSIVRCQEQMSFVTEEEQQMQEMDRWRQSKGG RYNINDEENGIEETYCSMKIKHNLEKPLHADFFSSDAGKINVVNREKLPILGYLDMSAERGTILPNAMYTPHWSMTDHRVVYVVAGELQVQISDDKGNQI MNNRVQEGEMFVIPQFYATMGMAGNQGCEYLTFKTSGKPMKHQIAGYTSVMRAMPIDVISNAFQMSPREAEQLKMNRDPESMLLSPTRGSSRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03890			RmlC-like cupins superfamily p...		Lus10003554 [exp]	0	1
AT1G10640			Pectin lyase-like superfamily ...		Lus10030886 [exp]	10.5	0.8989
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	19.4	0.8885
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	25.0	0.8041
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10020801 [exp]	26.7	0.8784
					Lus10021217 [exp]	27.8	0.8793
AT2G48020			Major facilitator superfamily ...		Lus10027977 [exp]	28.0	0.8770
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	33.3	0.8182
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	36.2	0.8764
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10013681 [exp]	39.1	0.8751
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	42.4	0.8744

Compare expression of checked genes

Lus10003554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.