Plant FIBer expression Database

Lus10003556 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033890
[exp]
277 / 1e-95 ND /
Lus10011818
[exp]
41 / 0.0003 AT4G14380 59 / 3e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G038400
[exp]
97 / 5e-25 AT2G20500 58 / 7e-11 unknown protein
Potri.005G224200
[exp]
83 / 6e-20 AT2G20500 53 / 3e-09 unknown protein
Potri.008G167200
[exp]
49 / 2e-07 AT4G14380 87 / 2e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10003556 pacid=23155668 polypeptide=Lus10003556 locus=Lus10003556.g ID=Lus10003556.BGIv1.0 annot-version=v1.0
ATGTCGTCGTGCTTCAACCTCAGGCTTCCCCACCCAAACAAGGCATGGAAGAGCTTCACTTCCAAGCTCCGTACAAAACTCCACAAGCTCCACAAGAACC
CCAAATCCCTCAAGAAGAGAAAACCCAAACATATGATCTCGTCCACCTCTAGTACTCTCACTTACCCTATCATCATCAATCCTGCCGCAACTTCCGTTCC
TTCTAATTCTCTTTCGAAGGAGTACCGGAAGATCAGGCGGGGAAGACTGGAGATCAGTCTGCCTCGCCGTGGTCTTCCGTTCAAACGGAAGAGCAGCAGG
CGGCTCCGTTTCTACAACAGGAGCTGCTCTGCAGCGCCTGTCTTTGTCAACAGGCTCTTCGTAGTAGAGCCCCCGATTATGGAGGTGCTGACGACGACTC
AGTGTGAGGCGTCGTCAAGTGGGGAGAAGACTAATGAGTTGATGGCAGCTGGGACGAGCGGGGAGGAGGAGGGTGGAGCTGATGAGATGTGGGAGTCGTT
GGGATATGAATCGCCTCTGATGAGGGGGATTGATGAGAGGGCTGACGAGTTCATTTCTAGTTTCAGGGCTGAGATGCTAGTTCAGGAGAGGATGATTTCC
CTTCGTAGCTTGTAG
AA sequence
>Lus10003556 pacid=23155668 polypeptide=Lus10003556 locus=Lus10003556.g ID=Lus10003556.BGIv1.0 annot-version=v1.0
MSSCFNLRLPHPNKAWKSFTSKLRTKLHKLHKNPKSLKKRKPKHMISSTSSTLTYPIIINPAATSVPSNSLSKEYRKIRRGRLEISLPRRGLPFKRKSSR
RLRFYNRSCSAAPVFVNRLFVVEPPIMEVLTTTQCEASSSGEKTNELMAAGTSGEEEGGADEMWESLGYESPLMRGIDERADEFISSFRAEMLVQERMIS
LRSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10003556
[exp]
0 1
AT4G32870 Polyketide cyclase/dehydrase a... Lus10000573
[exp]
1.0 0.9724
AT4G10790 UBX domain-containing protein ... Lus10027684
[exp]
1.4 0.9723
AT4G17720 RNA-binding (RRM/RBD/RNP motif... Lus10011063
[exp]
2.0 0.9586
AT2G17700 STY8 serine/threonine/tyrosine kina... Lus10004153
[exp]
2.4 0.9637
AT4G15450 Senescence/dehydration-associa... Lus10012957
[exp]
3.2 0.9489
AT1G23550 SRO2 similar to RCD one 2 (.1) Lus10013012
[exp]
4.6 0.9401
AT2G22475 GEM GL2-EXPRESSION MODULATOR, GRAM... Lus10010279
[exp]
6.5 0.9409
AT2G15680 AtCML30 calmodulin-like 30, Calcium-bi... Lus10014050
[exp]
7.3 0.9381
AT4G32870 Polyketide cyclase/dehydrase a... Lus10006042
[exp]
8.0 0.9397
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Lus10028349
[exp]
8.5 0.9336

Lus10003556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.