Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31190 623 / 0 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 154 / 6e-42 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 144 / 9e-39 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 139 / 9e-36 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 121 / 4e-30 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G23470 97 / 9e-22 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033888 [exp] 768 / 0 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10038136 [exp] 157 / 1e-42 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 156 / 2e-42 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 148 / 4e-39 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 148 / 4e-39 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 137 / 5e-36 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 120 / 1e-29 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 119 / 4e-29 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10037076 [exp] 102 / 1e-23 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224000 [exp] 670 / 0 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.002G038600 [exp] 312 / 2e-105 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 150 / 4e-40 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 133 / 3e-34 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 132 / 3e-34 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 107 / 5e-25 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 87 / 3e-18 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10003558 pacid=23155649 polypeptide=Lus10003558 locus=Lus10003558.g ID=Lus10003558.BGIv1.0 annot-version=v1.0 ATGGAAGTCAGCTGGATTGAAGCCTCTGATTCTGTTTCCCGTCGTTTCCAGTTCGAACCCGACGGTTACCTTTCTGTGAGGGTGGTGGATGATGCAAGAC CTGTAGTCCGAAAGGTGGTTGAGTCTTTCGTGAACAAGTTTTTCCCTTCTGGATATCCATACAGTGTAAATGAAGGTTATCTCAGATACACACAATTCCG GGCACTTCAGCATGTCTCCAGTGCAGCATTATCTGTTCTATCAACTCAGTCCCTACTATTTGCTGCAGGGTTGCGACCTACACCAGCTCAGGCGACTGCC GTGAGTTGGATATTGAAGGATGGGATGCAACACGTTGGAAAGCTGATATGTAGCAATTTGGGTGCTAGAATGGACTCTGAGCCAAAACGTTGGAGAATAC TGGCTACGGTTATCACAGCTGATTTGCTATATGATCTGGGCTCTGGGTTGGAAGTTATTTCTCCATTGTGCCCTAGTCTCTTTCTCGAAGTAGCTGGACT TGGCAATTTTGCTAAGGGGATGGCAGTAGTTGCGGCAAGGGCAACAAGACTACCAATATATTCATCATTTGCCAAAGAAGGCAATTTGAGTGACCTGTTT GCTAAGGGAGAGGCCATCTCAACACTTTTCAATACACTTGGACTGGGACTAGGGATTCAACTAGCAACTACAGTCTGTTCCACGACGCAGGGGAAGATGG TGGTCGGGCCTCTTTTGTCTGTGATTCATGTTTATAGTGTCGTCGAGGAAATGAAAGCCGCTCCAGTAAATACATTAAATCCACAAAGGACTGCACTAAT TGTGGCTGATTTTGTAAAGGATGGGAAAGTATCAAGCCCTGCTGATATAAGGTACCATGAAGATCTGATGTTCCCCGGAAGACTTATAAAAGATGCCGGC AGCGTCAAAGTGGGGCAGGCTCTACACAGGGTAATTAAGCCTTCGAAACTCGAAGAATACAAAGAGATGTTCCCCAATGAGAAATTTGTTATCAGCCGGA GTAAAAAGAACTGCACCAACATGGTACTGGAGCACGACGCCACTGGTGAAGATGCACTGAGGGGTTGGCTTGTAGCTGCATATGCTGCCAACATGGAGAA TTCGTCTAATGGGTTCAGTTCAACAGGGTTGCAAGATGCTTACGAGAAGATGGACAGTGTATTCGATAAGTTCACGTCCGAGTTGCATGCCAAAGGCTGG CATACTGATCGCTTTCTGGATGGAACCGGAACCCGTTTTGCCTGCTAG
AA sequence Show only first row Show all	>Lus10003558 pacid=23155649 polypeptide=Lus10003558 locus=Lus10003558.g ID=Lus10003558.BGIv1.0 annot-version=v1.0 MEVSWIEASDSVSRRFQFEPDGYLSVRVVDDARPVVRKVVESFVNKFFPSGYPYSVNEGYLRYTQFRALQHVSSAALSVLSTQSLLFAAGLRPTPAQATA VSWILKDGMQHVGKLICSNLGARMDSEPKRWRILATVITADLLYDLGSGLEVISPLCPSLFLEVAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLF AKGEAISTLFNTLGLGLGIQLATTVCSTTQGKMVVGPLLSVIHVYSVVEEMKAAPVNTLNPQRTALIVADFVKDGKVSSPADIRYHEDLMFPGRLIKDAG SVKVGQALHRVIKPSKLEEYKEMFPNEKFVISRSKKNCTNMVLEHDATGEDALRGWLVAAYAANMENSSNGFSSTGLQDAYEKMDSVFDKFTSELHAKGW HTDRFLDGTGTRFAC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	0	1
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	4.1	0.8355
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	6.3	0.8078
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	6.9	0.8100
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	7.6	0.8233
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	8.1	0.8176
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	9.2	0.8110
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	12.8	0.8146
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	15.4	0.8153
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	16.9	0.7989
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	16.9	0.7573

Compare expression of checked genes

Lus10003558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.