Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14385 135 / 4e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033887 [exp] 207 / 6e-67 AT4G14385 134 / 4e-38 unknown protein Lus10021187 [exp] 156 / 2e-49 AT4G14385 174 / 1e-56 unknown protein Lus10011821 [exp] 143 / 3e-44 AT4G14385 172 / 8e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223900 [exp] 209 / 1e-70 AT4G14385 166 / 2e-53 unknown protein Potri.002G038700 [exp] 207 / 2e-69 AT4G14385 168 / 4e-54 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09340 [flax] [poplar] NuA4 Histone acetyltransferase subunit NuA4
Representative CDS sequence Show only first row Show all	>Lus10003559 pacid=23155665 polypeptide=Lus10003559 locus=Lus10003559.g ID=Lus10003559.BGIv1.0 annot-version=v1.0 ATGGATCCCGAAGGTCAGCAAGGAGCATCAGCAAATCCTTCTGCGATCATCAGTGCTATTCTCAGCAAGAGCGCCAAGCTCCACGAAGAGCTACGAACCA TTGAAAAACAGGTGTATGATATGGAGACAAACTACTTGCAGGATCCAAGCCAGTGTGGCAATGTAGTGAAAGGTTTCGAAGGATTCTTATCTTCAACTAA GAACACTGCACTCTTGAAGCGGTCTAGGAAGTTTCAACCTGACGATAGACTGTTCTCATTATCTTCAGTTACCTCACCTGCAGCTGAGGAGCAAGCAGTT GGGCGAGACGATGGGAAATCAGATTTCGGTCTAGGTCGGTCTAAGGGTGGAGGCATATATGCAACCGGGCAAGGCAAACCAAAGAGGGGAAGAGGCGCAC TAAGGGATGTCAAGAGAATCAAAGCTTCAGCAGACCCTGACTTTGACTATGATGATGATCCGGATATGATGATGTAG
AA sequence Show only first row Show all	>Lus10003559 pacid=23155665 polypeptide=Lus10003559 locus=Lus10003559.g ID=Lus10003559.BGIv1.0 annot-version=v1.0 MDPEGQQGASANPSAIISAILSKSAKLHEELRTIEKQVYDMETNYLQDPSQCGNVVKGFEGFLSSTKNTALLKRSRKFQPDDRLFSLSSVTSPAAEEQAV GRDDGKSDFGLGRSKGGGIYATGQGKPKRGRGALRDVKRIKASADPDFDYDDDPDMMM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14385			unknown protein		Lus10003559 [exp]	0	1
AT3G52220			unknown protein		Lus10038762 [exp]	2.6	0.9495
AT3G51100			unknown protein		Lus10028362 [exp]	3.2	0.9149
AT4G08240			unknown protein		Lus10009881 [exp]	5.3	0.9233
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	5.5	0.9354
AT5G47090			unknown protein		Lus10035047 [exp]	8.5	0.9137
AT2G37480			unknown protein		Lus10003982 [exp]	8.8	0.9129
AT3G51100			unknown protein		Lus10041813 [exp]	10.8	0.9008
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	11.2	0.9120
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	12.2	0.9313
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	13.7	0.9146

Compare expression of checked genes

Lus10003559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.