Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54700 906 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT2G38940 895 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT5G43350 835 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43360 834 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43370 811 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT2G32830 811 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43340 732 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G20860 496 / 1e-171 PHT1;8 phosphate transporter 1;8 (.1) AT1G76430 488 / 1e-168 PHT1;9 phosphate transporter 1;9 (.1) AT4G08878 355 / 2e-120 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033886 [exp] 1051 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10014754 [exp] 889 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10011826 [exp] 840 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 833 / 0 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10016635 [exp] 812 / 0 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10012860 [exp] 638 / 0 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 635 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10027575 [exp] 608 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10022548 [exp] 551 / 0 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223600 [exp] 913 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.002G038900 [exp] 866 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 838 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G071500 [exp] 830 / 0 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071600 [exp] 805 / 0 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 798 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 777 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 759 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175700 [exp] 738 / 0 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.019G061900 [exp] 629 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10003560 pacid=23155648 polypeptide=Lus10003560 locus=Lus10003560.g ID=Lus10003560.BGIv1.0 annot-version=v1.0 ATGGCGGGTGACTTAAAAGTTCTGAATGCACTGGACGTGGCCAAGACACAATGGTACCACTTCACCGCCGTGGTAATCGCCGGCATGGGCTTCTTCACAG ACGCCTACGACTTATTCTGCATTTCCCTAGTCACAAAGCTCCTCGGCCGAATCTACTACCACGTCCCCGGATCCTCAAAACCAGGATCTCTCCCGCCGAA TGTCTCCGCTGCCGTCAACGGCGTCGCCCTCTGCGGTACCCTCGCCGGACAGCTCTTCTTCGGTTGGCTCGGCGACAAGATGGGCCGGAAAAGGGTCTAC GGACTCACTCTCATGCTCATGGTGATCTGCTCGATCGCGTCCGGACTCTCCTTCGGGAACGAGCCAAAGACCGTGATGACCACGCTCTGTTTCTTCCGGT TCTGGCTTGGCTTCGGAATCGGCGGCGATTACCCCTTGTCGGCTACCATCATGTCGGAATATGCTAACAAGAAGACTAGAGGAGCTTTCATCGCTGCTGT TTTCGCTATGCAAGGGTTTGGAATCTTGACCGGAGGGATCTTCGGTATGATCATCTCCTCTGTTTTCAACAGCCAGTTCGGAGCTCCGGCTTATGAGGTG GACGCCGACGCCTCCACCGTCCCGCAGGCGGATTACGTGTGGCGTATAATTCTCATGGTCGGTGCTTTGCCCGCTGCGATGACGTACTATTCGAGATCGA AGATGCCGGAGACTGCCAGGTACACTGCCCTGGTGGCCAAGGACGCAAATCGAGCGGCGAAAGACATGTCTAAGGTTCTGCAGAAGGATATCGAAGCAGA GGACGACAAGGTCAGTACAGTAATTTCCACAGGGGAGGATCAGAAGCAAGAGTACGGATTGTTCTCCAGAGAATTCCTCCGCCGTCACGGCAAGCACTTG TTAGGCACGACGACGACTTGGTTCTTACTCGACATAGCGTACTACAGTCAGAATCTATTCCAGAAGGACATATTCAGCGCGGTGGGGTGGATCCCGCCGG CCAAGACGATGAACGCGGTTGAGGAGGTTTACAAAATCGCCAGAGCTCAGACCCTAATCGCCATCTGCAGTACAGTTCCGGGATACTGGTTCACTGTCTT CCTGATCGACGTAATCGGGAGGTTCGCGATCCAATTGATGGGGTTCTTCTTCATGACGGTGTTCATGTTCGCCCTGGCAATTCCGTACAACCACTGGACT CACAAGGGGAACCACATCGGGTTCGTGGTGCTGTACGCGCTGACTTTCTTCTTCGCGAATTTCGGCCCCAATGCGACGACGTTTGTGGTCCCCGCGGAGA TTTTCCCGGCCAGGGTGAGGTCTACCTGCCACGGGATTTCGTCGGCGGCCGGGAAATTGGGAGCGATAGTCGGAGCGTTTGGGTTCTTATACTTGGCGCA AAATCAGGATCCAGCGAAGGCGGATGCAGGGTATCCGGCGGGTATCGGGGTGAAGAACTCGTTGATTGTGCTGGGTGTGGTGAATTTGTTGGGGATGTTG TTTACGTTCTTGGTGCCGGAGTCGAAAGGGAAGTCGTTGGAAGAGATGTCCGGTGAGAATGAACAAGAAGATAATAATAATAATAATGGGAACAATAGGA CTGTTCCAGTGGTTGCTTAA
AA sequence Show only first row Show all	>Lus10003560 pacid=23155648 polypeptide=Lus10003560 locus=Lus10003560.g ID=Lus10003560.BGIv1.0 annot-version=v1.0 MAGDLKVLNALDVAKTQWYHFTAVVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVPGSSKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKRVY GLTLMLMVICSIASGLSFGNEPKTVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGIFGMIISSVFNSQFGAPAYEV DADASTVPQADYVWRIILMVGALPAAMTYYSRSKMPETARYTALVAKDANRAAKDMSKVLQKDIEAEDDKVSTVISTGEDQKQEYGLFSREFLRRHGKHL LGTTTTWFLLDIAYYSQNLFQKDIFSAVGWIPPAKTMNAVEEVYKIARAQTLIAICSTVPGYWFTVFLIDVIGRFAIQLMGFFFMTVFMFALAIPYNHWT HKGNHIGFVVLYALTFFFANFGPNATTFVVPAEIFPARVRSTCHGISSAAGKLGAIVGAFGFLYLAQNQDPAKADAGYPAGIGVKNSLIVLGVVNLLGML FTFLVPESKGKSLEEMSGENEQEDNNNNNGNNRTVPVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10003560 [exp]	0	1
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	1.4	0.9340
AT1G64140			unknown protein		Lus10024712 [exp]	2.4	0.9157
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	3.2	0.9247
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	5.3	0.9066
					Lus10036528 [exp]	5.3	0.8651
AT1G45688			unknown protein		Lus10025793 [exp]	9.4	0.8765
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	10.7	0.9012
					Lus10020547 [exp]	12.7	0.8500
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	13.3	0.8717
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	14.8	0.8726

Compare expression of checked genes

Lus10003560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.