Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003561 pacid=23155656 polypeptide=Lus10003561 locus=Lus10003561.g ID=Lus10003561.BGIv1.0 annot-version=v1.0 ATGATCGACGTCGCCATTTCTCCCATCATGGGAAAGAACAGAATCGCCTGCAGGTTCTCCTTCGATGATCTGGTTAAAGAAGTAAACTTGCAACATCTGA CCCTTCAGATGCCAACTTCAGATGGAGATGCTATTATTGCTCATCTGAGGCGTACCAGGGAAAGTTTTGCCAGATTCAATTTCAAGAGAAACATACAGCT ATTCATTGGCTTTTCCATCTTCACTCTGGTGGTTTCTTTTCCTTCGTTCAGCGAGGAACACATGGACTTGGAAGTTAGGGCAATACGGCTCTGCTGTCTT GTTTCGGGCAGCATAATGTATTTCCTTTTGCTCGAGTTGCACGTTCTGTTTCCCCGTAGACTATCGCAACAAGAATGGAGGCAGGTTCGGTTAGCCGGAT ATGTACAGGAAACCCTGATGATTATTGTGCTTGTTCCATTGCTCTATTGCATCTTGGAGGAATCATTTGTTATACCAACACACATATAA
AA sequence Show only first row Show all	>Lus10003561 pacid=23155656 polypeptide=Lus10003561 locus=Lus10003561.g ID=Lus10003561.BGIv1.0 annot-version=v1.0 MIDVAISPIMGKNRIACRFSFDDLVKEVNLQHLTLQMPTSDGDAIIAHLRRTRESFARFNFKRNIQLFIGFSIFTLVVSFPSFSEEHMDLEVRAIRLCCL VSGSIMYFLLLELHVLFPRRLSQQEWRQVRLAGYVQETLMIIVLVPLLYCILEESFVIPTHI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003561 [exp]	0	1
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	12.9	0.8009
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	16.7	0.7826
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10017470 [exp]	18.0	0.7390
AT5G19430			RING/U-box superfamily protein...		Lus10036034 [exp]	18.3	0.7719
AT1G07040			unknown protein		Lus10030795 [exp]	19.1	0.7978
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	20.3	0.7756
AT5G35460			unknown protein		Lus10017161 [exp]	25.8	0.7651
AT5G20030			Plant Tudor-like RNA-binding p...		Lus10003091 [exp]	30.6	0.7571
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	35.7	0.7444
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	40.5	0.7467

Compare expression of checked genes

Lus10003561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.