Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31240 711 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G27960 137 / 7e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 132 / 3e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 128 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033883 [exp] 1192 / 0 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 143 / 5e-36 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 143 / 7e-36 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008786 [exp] 129 / 7e-31 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 127 / 2e-30 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002376 [exp] 122 / 7e-29 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 119 / 6e-28 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222900 [exp] 773 / 0 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G039801 [exp] 147 / 2e-41 AT2G31240 148 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 138 / 3e-34 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G080100 [exp] 133 / 3e-32 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G173400 [exp] 125 / 6e-30 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G075300 [exp] 125 / 6e-30 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G100400 [exp] 122 / 5e-29 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G094700 [exp] 121 / 2e-28 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G143200 [exp] 118 / 8e-28 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003563 pacid=23155676 polypeptide=Lus10003563 locus=Lus10003563.g ID=Lus10003563.BGIv1.0 annot-version=v1.0 ATGAAGAGATTTTCGATTTCACTTCTCTCCAGGCTCACTCGCCCAAATTCCAAAACTTCATTTCCCCCTCTGCTCACCAGAGAGTACCACCATGTCTCCG ACTACCCATCATCATCATTATCTCCTTCATCTCTCCACTCCACATCATCTAGCAATCTCAATAAACCCTGCGCCAGAACCCAAGCTCTTTTCATCAAACC CCGCTTCTTATCCGCCGACCCATCTCAGAACACCCTAGTCGAGATCCCACCGCCGCTGAGGCAAAGGAAATTACGCGAAAAATCACAGCTCGAGGATGCG CTGGAGTCCGCCGAGACAACCAAGGAAATGCTCAGGATTTTCCAACAGATGGAGGCTTCTTTCCACGAGCGAGAGCTTGCGTTGCCGGCTTTGAAAGTCG GGCTTCAACTCGATCGGGACCAAAATGTTGACCCTCAAAACACCCTAGCTTTCGCTACTAAGGCTTTACAACTTCTCGATAGAGATGATGACAACAGCAT TAATAGTAAGATCAACTCCTTTTACGTTTCCATGGCGTTACAGTTGATTGGTTCCGTATGTTACAGATTGAAAAGGTTTAGTGATAGTTTAGGGTACTTG AGTAGAGCTAATAGGATGTTGGTTGTGTTGGAAGAAGATGGGAATGCTGATAAAATTGAGGACATCTTGCCCTTAAGGCACGCAGTCCTTGCCGAATTGG CCAATGTTAAGACCGCAATTGGGCGGAGAGAAGAAGCTCTTGAGAATTTGAGAACTTGCTTAGATATCAAAGGTGTGATCTTGGACAAGGATGGTAAAGA GTTCGGTGTTGCGAATAGGGATTTGGCAGATGCTTATGTAGCTGTGTTAAATTTCAAGGAGGCGTTACCGTTTGCGAAGAAAGCGCTGGAGATACACTTG AATGGATTGGGGAATAACTCGGTCGAAGTTGCACACGATAGGAGGCTTCTCGGTGTGATCTACAGTGGACTGGAGGAGCACGAGAAGGCTCTCGAGCAGA ACGAGCTCTCGCAGAAGGTTCTTCGGAATTGGGGGCTTAGTGCTGATCTGTTGCGTGCGGAGATCGATGCTGCCAATATGCAGATTGCGCTGGGGAAGTT CGACGAGGCGATCGGGACGCTGAAGAGTATAGTGCAGCAGACTGAGAAAGACAGCGAGAATCGCGCGTTGGTGTTTATCTCGATGGCGAAGGCTCTATCC AGTCAGGAGAAATTCGCAGATGCGAAGAAGTGTCTTGAAATTTCACGCGGAATTCTCGAGAAGAAGGAGAAGGTCTCTCCCGTCGAAGTTGTGGAGGCGT ACTCGGAGATAGCAATGCAGTATGAGAACATGAATGAGTTCAAAAACGCTATATCTTTGTTGAAAAAGACGCTCTCTTTGGTCGAGAAGCTCCCACAGGA GCAGCACTCGGAAGGGAGCATCTCTGCTCGAATCGGATGGTTACTGCTGTTGACCGGTAGGGTGATTCAAGCAATTCCTTTCTTGGAGAGTGCTGCTGAG CGATTGAAAGAGAGCTTCGGCCCCAAGCATTTCGGAGTGGGATATATCTACAACAACTTGGGTTCGGCATACTTGGAGCTGGATCGGCCACAGTCAGCTG CACAGATGTTTGCAGTTGCCAAGGATATAATGGATTCAGCGCTCGGCCCGCATCATGCAGATTCTATAGAGTCATGCCAGAACCTCTCAAAAGCCTATGC TGCAATGAAAAACTATGGCCTTGCTATCGAATTCCAGCAGCGAGTGGTTGATGCATGGGAGAGCCATGGAGCCAATGCAAAGGACGAACTTGAGGAAGCT CGTAAACAGTTGGAGCAATTGGAGATGAAGGTTCTTACTCAATCCTCCATGGAGCAACGCCCTAGGAAGGCCTTGCCCCTTGCCTCGGAGGATTCCTTCT GA
AA sequence Show only first row Show all	>Lus10003563 pacid=23155676 polypeptide=Lus10003563 locus=Lus10003563.g ID=Lus10003563.BGIv1.0 annot-version=v1.0 MKRFSISLLSRLTRPNSKTSFPPLLTREYHHVSDYPSSSLSPSSLHSTSSSNLNKPCARTQALFIKPRFLSADPSQNTLVEIPPPLRQRKLREKSQLEDA LESAETTKEMLRIFQQMEASFHERELALPALKVGLQLDRDQNVDPQNTLAFATKALQLLDRDDDNSINSKINSFYVSMALQLIGSVCYRLKRFSDSLGYL SRANRMLVVLEEDGNADKIEDILPLRHAVLAELANVKTAIGRREEALENLRTCLDIKGVILDKDGKEFGVANRDLADAYVAVLNFKEALPFAKKALEIHL NGLGNNSVEVAHDRRLLGVIYSGLEEHEKALEQNELSQKVLRNWGLSADLLRAEIDAANMQIALGKFDEAIGTLKSIVQQTEKDSENRALVFISMAKALS SQEKFADAKKCLEISRGILEKKEKVSPVEVVEAYSEIAMQYENMNEFKNAISLLKKTLSLVEKLPQEQHSEGSISARIGWLLLLTGRVIQAIPFLESAAE RLKESFGPKHFGVGYIYNNLGSAYLELDRPQSAAQMFAVAKDIMDSALGPHHADSIESCQNLSKAYAAMKNYGLAIEFQQRVVDAWESHGANAKDELEEA RKQLEQLEMKVLTQSSMEQRPRKALPLASEDSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	1.0	0.9040
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	2.0	0.8811
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	2.8	0.8721
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	4.7	0.8552
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	5.5	0.8711
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	5.5	0.8667
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	5.7	0.8325
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	5.7	0.8622
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	6.2	0.8533
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	8.4	0.8523

Compare expression of checked genes

Lus10003563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.