Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033831 [exp] 219 / 9e-62 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10027773 [exp] 78 / 6e-15 ND 56 / 7e-08 Lus10027763 [exp] 62 / 5e-10 AT5G27220 53 / 4e-07 Frigida-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044200 [exp] 76 / 3e-14 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00669 [flax] [poplar] Flagellin_N Bacterial flagellin N-terminal helical region
Representative CDS sequence Show only first row Show all	>Lus10003566 pacid=23155663 polypeptide=Lus10003566 locus=Lus10003566.g ID=Lus10003566.BGIv1.0 annot-version=v1.0 ATGGAGAAACTGAGGGAGGATCTCAAAGCTACTGAGTCGACTCAAGCTTGTTTGCGGGCGCAGACTGAAGAAATCCAAGCACACAATAACGCCATCATGA AGGAACTCATCCTTCAATGGAAGGATTTGGAGTTACATTTCGAGTCAGTAAGGAGTGGATTGCTGGAACAGGCGAAAGAGCTTTCCTTTCGAGAAATGCA AGTGGTTGAAGCTGAGGAGAAGGTCAGATTAAAGGTGACTGAAGTTGAGGATGAAATGAAAAAGGTTCAAGAGATGAGAGTCAAGGAAGAACAACTGGAT TTGCTTCAAGGTAAAGTTTTAGAGTGTCGATCTGAGCTTGATAGGAAGGAGAAGGAACTAGATTCTGTCCAAAACAAGGTTAAAGTTTGTGCAGAGAATC TTGAGGGGAAGGAAATGGAATTGGGTGATATTAATGAGGAAATTTCTGTTAAGGCCGCAGAATTAGGCGTGCTAACGAATGCAGTCGACGAACTTACGTC CAAGCAGAAGGAGATGGAGGAAGTAGTGAAATCGATTTCAGATTTTACTTCTCAGTTGCAGGTGAAACAGAAAGAGTTGAATGAGTTGGAGGAGCTGATC CAAAACTACAAATTGGAGGAATGGCGGTTGGCCGAGTTGGAGGAGAAGAGTAGAAATTGTAGTGAAGAGCTTCAAGTGAAACAGAAGGAACTCAGTGGTG TCAGAGAGATGATTGAGATTTTAAATACAGAATATGAGAAGAAGGCAGTGAAGTTCAATGAGTCCGTCAAGGAAACAGAACTACTTGACGAGTCAATCAG TAAGTCTCGCTTAGAAGATAACATGTATAAAGTGGAACTTGAATCAAAGGCGAATTCGCTGATCCTTTATAATAAAAAGGTAGAAGAATCTCGTAAGGAT CTTGAAGTTCAACAAGCTGAGGTTTTTGCTGTCCAATCTCAGATAATCGAACTTAACAAGGAGCTCGAGGATGGTAGGAGAGGGGTTCTAGGAGTTTGTG GGGAGGAGATGAGACTCGAGGTAAAAGAAGAATTGGGTTTGCTTAAAGGTCAAGTTTTGGAGTGTCACTCAATGCTTGAAGAGGAAGAGAAGAAATTGGT AGCTGTTCAAAACAAGGTTGAAGTGTGTACAAAGGATCTTCAGGAGAAAGAAAGGAGCTTGGATGAGATTTACGAGGACATCAATAATAAAACGGCAGAA CTCAGTGTAGTTAAGAAATCGGTTGAGGAAAAGTGTAAGGAGCTTAACTTAAAGCAGAAGGAAGCAGATGAGTTGGTGGAATTGCTTTCAGATTGTAGTA GTCAGCTCCATTTGAAAGAGAAGGAGTTGAATGAAGTGAAGGAGTTGGTTAGAGACTGTAATGTGGAGCTTGATTTGAAACAGAAGGAATTGGATGGTGT CAAAGATTCAATTGAGAATTGTCTCAAAGAGTTGGGTTTGAAGAAGAAGGAGGTAGAGAAAACCAGGAGCTTGGTTGAGCAGCAACAAAATGAGCTTGAT TCGAAGAAGATAGAGATGAAATCAGTTACAGGGGTTATCGAGGAATTCAATGAAGAACTTGAGAGAAAGGAAGAGGAGTACAATGAGTTAATCAAGTCCA TTAAGGAAAAAAAGAAGGTAAGATTCGCCTGA
AA sequence Show only first row Show all	>Lus10003566 pacid=23155663 polypeptide=Lus10003566 locus=Lus10003566.g ID=Lus10003566.BGIv1.0 annot-version=v1.0 MEKLREDLKATESTQACLRAQTEEIQAHNNAIMKELILQWKDLELHFESVRSGLLEQAKELSFREMQVVEAEEKVRLKVTEVEDEMKKVQEMRVKEEQLD LLQGKVLECRSELDRKEKELDSVQNKVKVCAENLEGKEMELGDINEEISVKAAELGVLTNAVDELTSKQKEMEEVVKSISDFTSQLQVKQKELNELEELI QNYKLEEWRLAELEEKSRNCSEELQVKQKELSGVREMIEILNTEYEKKAVKFNESVKETELLDESISKSRLEDNMYKVELESKANSLILYNKKVEESRKD LEVQQAEVFAVQSQIIELNKELEDGRRGVLGVCGEEMRLEVKEELGLLKGQVLECHSMLEEEEKKLVAVQNKVEVCTKDLQEKERSLDEIYEDINNKTAE LSVVKKSVEEKCKELNLKQKEADELVELLSDCSSQLHLKEKELNEVKELVRDCNVELDLKQKELDGVKDSIENCLKELGLKKKEVEKTRSLVEQQQNELD SKKIEMKSVTGVIEEFNEELERKEEEYNELIKSIKEKKKVRFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003566 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	2.4	0.8626
AT1G16810			unknown protein		Lus10033383 [exp]	6.9	0.8240
AT3G23490		CYN	cyanase (.1)		Lus10042087 [exp]	8.5	0.8152
					Lus10024538 [exp]	8.5	0.8218
AT1G16000			unknown protein		Lus10011478 [exp]	9.9	0.7852
AT2G29590			Thioesterase superfamily prote...		Lus10018205 [exp]	17.3	0.7878
AT4G00530			unknown protein		Lus10037854 [exp]	17.4	0.7968
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	17.5	0.7959
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	22.4	0.8306
AT2G45250			Integral membrane protein hemo...		Lus10014432 [exp]	27.6	0.7049

Compare expression of checked genes

Lus10003566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.